Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01374 ATGGGTGGTTCATGGAGTAACAGTAATAACAGAAACAGAAGAAGAAACAGTTACCATGAACACTACCCACCTCCTCCTCCAACCTACTATTATCAATACTCTTCTCAACCTCACCCTATCATGCCACAGCCACAGCCTCAGCCTCCTCAAGGTTACTTTCCTCCTCACTCTCATCAATTCTACTCAAATCTCCCTCACCAACCTTCCTATGCAGCAGCAACAAATACTCAACCGTTCGGAGTAGATTCGAATGTAAATGTTGCTCAACCACCGCCACCAGCACCTTATGTTGACCATGAAACTGCAAAGAAAGTAAGGAATGATGTCAATTTGCATAAACATACTCTACAGCTCTACCTGGATCCCAACAATCCCGATCACCACTTGGTTTCCTTCACTTTCGACGCTCTCTATGATGGCAGAATTACAATCTTTTACTTAGCGAAAGAAGAAGAACATAAATGTAGGTTTTTTCCTCTATTTCCCGAAGCGTTTGCACCGATATCGTTCCCTTTCCAGAAAGGAGTTGGTCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACTTAGGTTTCTTTGAGTTGGATGATCTTTCAAACCCTTCACCCGAAGAAGATATTTTTCCACTCGTGATATGCGCCGAAACAACACCTATGGCAGATCACGAAACCTCCTCTAGTTCCTTTGTAGATGCATCCCCTCATATGCAAATTACTCAAGCTGTTTTGGAGAAAACCAATGGAATTGGTCCTTTCCAGGTTAAAGTAGTTAAGCAGATTCTATGGATCGACCAAGTTCGTTATGAACTGCGAGAGTTATATGGAATCGGTAACTCAACAGCGCCTGATTTCGATCGTAATGATCCTGGAAAAGAGTGTGTGATATGCATGACTGAACCCAAGGATACTGCTGTCTTACCTTGCAGGCACATGTGTATGTGCAGTGAGTGTGCAAAAGCATTGCGCGTTCAATCAAATAGTTGCCCTATATGCCGCCAACCTATCGAGCAACTTATAGAGATCAAGATAAACAACGACGACGAAGAATAA 1050 0.4295 MGGSWSNSNNRNRRRNSYHEHYPPPPPTYYYQYSSQPHPIMPQPQPQPPQGYFPPHSHQFYSNLPHQPSYAAATNTQPFGVDSNVNVAQPPPPAPYVDHETAKKVRNDVNLHKHTLQLYLDPNNPDHHLVSFTFDALYDGRITIFYLAKEEEHKCRFFPLFPEAFAPISFPFQKGVGQKFCQPSGTGIDLGFFELDDLSNPSPEEDIFPLVICAETTPMADHETSSSSFVDASPHMQITQAVLEKTNGIGPFQVKVVKQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNSCPICRQPIEQLIEIKINNDDEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01374 349 PIRSF SBP1_RNase_bind 275 343 IPR017066 -
Vivi1g01374 349 PIRSF SBP1_RNase_bind 17 130 IPR017066 -
Vivi1g01374 349 MobiDBLite consensus disorder prediction 1 58 - -
Vivi1g01374 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Vivi1g01374 349 SUPERFAMILY RING/U-box 292 338 - -
Vivi1g01374 349 PANTHER MAHOGUNIN 1 343 IPR045194 GO:0061630
Vivi1g01374 349 MobiDBLite consensus disorder prediction 39 53 - -
Vivi1g01374 349 CDD mRING-HC-C3HC5_MGRN1-like 291 332 IPR045195 -
Vivi1g01374 349 FunFam probable E3 ubiquitin-protein ligase LOG2 277 342 - -
Vivi1g01374 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Vivi1g01374 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 342 IPR013083 -
Vivi1g01374 349 SMART ring_2 293 331 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01374 Vivi-Chr1 28602698 28604496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01374 96 349 C3H Transcription Factor Family AT3G06140 61.569 1.04e-103 307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01374 1 28602698 28604496 Vivi1g01374 1 28602698 28604496 ECH