Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01364 ATGATGAATATATTTTCGGTGTCTGCTGCTGTTTCTTCTGCTTGCAAGCCTATGGTGAGATTCCAACCGCCACTAATGGATAATGATAATTTAAGGTTTCAACAACATCGTAAAGAGAAAGTTGTCGTTGTCATGGGTGCTACCGGAACCGGGAAATCCAAGTTGGCTATAGACTTAGCAAACCATTTTCCACCGGCAGAGATTATCAACTCCGACAAAATGCAAGTGTACAAAGGACTTGACATCACAACAAACAAAGTCACCGAGGAAGAGTGTCGTGGGGTGCCACATCATTTACTTGGAACTATTGATCCTGATTCGAGTTACGCAATGGACGAGTTTTGCGAAGACGCGACTCTCGCTATTGGTTCTATTCTGGGGAGAGACGGGTTACCTATTATAGCAGGTGGGTCGAATTCGTTCATTGAAGGCTTGGTTAATCACCACCATGAGTTTCGTATGAAGTACGAGTGTTGTTTTCTCTGGGTGGATGTTTCTATTCCGGTGCTTCATTCGTCTTTATCGGCACGCGTGGATCGCATGATTGAAGCGGGTCAAGTTAATGAAGTTCGTGAGTTTTTCAACCAAAAAGATTTTGATTATGATTATACAAGAGGGATACGAAGAGCCATTGGAGTACCTGAGTTTGACGAGTTTTTTAGAGCGGAGTCAGAAGGTGTAACAGATGGAAGAACTATGAAGAAGCTTCTAGAAGTCGCTATTGATGCTCTTAAAGTGAATAACTGTATGCTTGCGAGTAAACAAGTGAAGAAGATTCATAGGCTTTATGGTATGTGGAAGAGGAACATGCACCGTCTTGATGCTACGGAGGTTGTTCTTAAGGAAGATAATTGGGAGGATCGTGTGTTGGCGAAGAGTCTTAGGATTGTTCATAAGTTTCTATACGAGGATTGTTCACGTGTCACAAGTGGTGGTAATGGTGGTGGTGGTAATGGTGGTGTTATTGTGCCTGCAAAAATTGCGAGTGTGGCAGGGGTAACCCATTAG 1008 0.4315 MMNIFSVSAAVSSACKPMVRFQPPLMDNDNLRFQQHRKEKVVVVMGATGTGKSKLAIDLANHFPPAEIINSDKMQVYKGLDITTNKVTEEECRGVPHHLLGTIDPDSSYAMDEFCEDATLAIGSILGRDGLPIIAGGSNSFIEGLVNHHHEFRMKYECCFLWVDVSIPVLHSSLSARVDRMIEAGQVNEVREFFNQKDFDYDYTRGIRRAIGVPEFDEFFRAESEGVTDGRTMKKLLEVAIDALKVNNCMLASKQVKKIHRLYGMWKRNMHRLDATEVVLKEDNWEDRVLAKSLRIVHKFLYEDCSRVTSGGNGGGGNGGVIVPAKIASVAGVTH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01364 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 197 IPR027417 -
Vivi1g01364 335 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 270 - -
Vivi1g01364 335 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 301 IPR039657 -
Vivi1g01364 335 Pfam IPP transferase 152 257 - -
Vivi1g01364 335 Pfam IPP transferase 75 148 - -
Vivi1g01364 335 FunFam Adenylate isopentenyltransferase 5, chloroplastic 167 270 - -
Vivi1g01364 335 Gene3D - 38 301 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01364 Vivi-Chr1 28366428 28368407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01364 155 301 C2H2 Transcription Factor Family AT2G27760 30.460 2.18e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01364 K10760 - gmx:100778430 421.009