Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01361 ATGGCACTTTGTAGTGGCAGTTTATGCAACCCTCAAATTGCGCTGCTTCCCCGTTCCGTAAATTTGAAGCAATCACAGTCGGAAATCACGTTTTCAACTCCAACCACTCTTTCACTATCAATTTCTGCCTCCAACGTTCTTCGCCATGCCCCTTTTCCACTGTTTTGCTGCATAGCCGATTCCACCTCCTCCACGTCTTCTGTCGAATCTCATAGTCCTTCTTCAAACAAAATCTTCATCAAAGGGCTTCCCCTCTCAACCTCTGAAGTGCATTTAGCCAAAGTGTTTTCAGTGTTTGGTGAAGTCACTCAAGTCAAGCTTTTGAAAGATAAAGAATCTGGACAGTCTCTAGGATTTGCATACATTTGGTTTATAGATGAAGAGTCTGCACAATCGGCTGCAAAAGAGACGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAGTTTGAAAAGGACAAAAGCCTACAAATTCTAA 507 0.4142 MALCSGSLCNPQIALLPRSVNLKQSQSEITFSTPTTLSLSISASNVLRHAPFPLFCCIADSTSSTSSVESHSPSSNKIFIKGLPLSTSEVHLAKVFSVFGEVTQVKLLKDKESGQSLGFAYIWFIDEESAQSAAKETNGKFFDGRFIYVTIAKPGSSKSLKRTKAYKF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01361 168 SMART rrm1_1 77 150 IPR000504 GO:0003723
Vivi1g01361 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 147 IPR000504 GO:0003723
Vivi1g01361 168 Gene3D - 58 165 IPR012677 -
Vivi1g01361 168 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 63 160 - -
Vivi1g01361 168 SUPERFAMILY RNA-binding domain, RBD 66 158 IPR035979 GO:0003676
Vivi1g01361 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01361 Vivi-Chr1 28240255 28241964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01361 34 154 Eukaryotic Initiation Factors Gene Family AT3G11400 30.081 4.67e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01361 - - psat:127073405 256.914