Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01353 ATGGATGAGATATCGTCTTCCACAAATGTCACTCAAGATGTTGGTTCAATCTCCGATGAAAATAATGAATCGTGGCAACATTTTGTCTTCCACGAGCTTTCATCAATCAAGGATTTCTATGCTAAATACGCTCATGAAAAGGGATTTAGCGTGAGAAGAAATTTGCATTCCTTCTATGATTCTCGTAACAAAAAAACGGACATTGTGCAATATATCCGTTATGTTTGTAACAAGCATGGTTTCAAGCACGGAAGTCGGGCGGATCCTAAGAACAAGACAAACTCGGATACTCCTGTTCTCATTGAATATCATAAAGAGAAAGAACTTCCCGAGGAAAGGACTGGTTGCCCAGCTAGTATTTCGTTGAAGTATGATTCCAATGTTAAAGGTTATCACATATACAAATGGAATGTTACTCATAACCACCCTCTCCATAAACCCGAGCATTCGCATTACTTGAGATCGGCTCGAGAGATTAGTGAGCCTCAAAAACAACTTGCTATAATAAATTCAAAATCAGGCATGTCTGTAAGATCCTCCTTTCAAGTTATGCGTCAAATAGCTGGTGGTTCAAAGAACCTTGGGTATTGCTTCCAAGATTTAAAGAACTTTCTCACCACTGTTCGACAAAAGGAAATGGTCATTGGTGATGCCACTATTATCCAAGAATATCTTAGAAACGAAGCTTTGAGGAACCCGTCATTTTATTATGATATCCAAGTAGATTCTGAAGAGAACATAGCTAGTATTTTCTGGTCAGATGCAATCATGCAGCAAGACTATGAATTATTTGGTGATCTCATCAGTTTCGACACTACTTATCGAACAAATACGGAGTATCGCCCATTAGCTCCGTTCCTTGGATTTGACAACCACCGTAAGAGTGTATTATTTGGTTGTGCCCTGCTATACGATGAGACTTCAGCAAGTTTTGATTGGTTGTTTACCACTTTCCTGAAGTGCATGAAAAATAAGAAACCCATTACAATTTATACAGACCAAGCTTCTGCTTTGATGAAGTCAGTTCCAAACATCTTCCCCGATGTCTTCCATGGCTTGTGTTCTTGGCACATGGGGGAGAATGCAAAGTCCAACTTAGGCTCTCGTTGCAATGGTGCATTTCTTGACGAACTACATCACTTGGTTTCGAATGTTGATGATGAGGCAGAGTTTGACTTCAATTGGAATAAGATGCTTCAAAATTGTTTTGGTGGTAAAGCCACTTCTGAATTTACTTGGCTTGTCCAGATTCATCGTAATCGTACTCAATGGTCTTCTGCTTGGGTGAAATCACACTTCACTGCCGGTTTGAAGACCACACAGTTAAGCGAGTCGTTCAATGCCTTTCTTCGCCACTTTCTTCAGCCAGACCACTCACTTGTGCAATTCTTTATCCATTTCAATGTTATGGTTGAGAAAATGCGAGATAATCATGCTGATTGTGATTTCAAGGCTGCTAATACTAGGCCAAGAAACAATTATCCCAACAGCCAACTCATGAGGTCCGTTGTCGCCAAGTATACTCCAGCATCGTTTGCATTCATTCACAAGCAATATGATCTTTCTTTCAAATATTATTATGAGGAGGACATGTCAAGAAGTTCAATTTCTAATAGAGTTTTCAAAGTGTTCACAATTCAACTTGTTCGTGATGCCGATGAGATGGATTTTGATAATGATGCCGCTGCGAATGTTTATATGTCGGTCGAAGAAGTTCCAGAAAACCTTCTTCCTAATGATCAAGATCCTTTGCGACTTGATGAGAGGGTTGTTACGGTAGATATTGGGAACAAGATTTTTACTTGTACCTGTCGGATGTTCGAGAACCGGGGATTCTTATGTCGCCATGTTTTCAAGATATTAGACTTCTTAGGGAGTTCTGTCCAATACCAGTCCTTGAAGTCCATACCTGACCACTACATATTGAAGCGTTGGACTAAAGGAATTCGTCCATCCCTTGATGCTTTAAAACCCATCAGTATTGGAGGTATTCAAGATACTACTTTTGCACAAAGATATCAACAAGCTTCTGGTGTTATGCTTCAGATTATAACCCGTGTTTGCATGGACCCTGATGCGTGCCAATTTTTTCTTAATGCTGCAATTGAATGTGGGAAGCAAGCGGAAGAGTTGATTGTTGCTAAAGGTGTTTCCGGTCAACCTTCATCTTCCAGGTCTGCATCTTGCAAAGATACTAGTGTTGCTGAACCTCTTGTAGTTGATTCTAGTGTAAAAAAGTTCAAAAAGAGACCCAATCCAATCAGGGCTAAGAAACGGCTCAAAAGTGATTATGAGTTAGCTAGGGAGAGACAAAGATTCATCGCACAGCGGAAGAAACAAAAGAAAGAAGAAGATGCTGCAAAATTAGCTTTAACAATCAACAATGTTGATTGA 2394 0.3985 MDEISSSTNVTQDVGSISDENNESWQHFVFHELSSIKDFYAKYAHEKGFSVRRNLHSFYDSRNKKTDIVQYIRYVCNKHGFKHGSRADPKNKTNSDTPVLIEYHKEKELPEERTGCPASISLKYDSNVKGYHIYKWNVTHNHPLHKPEHSHYLRSAREISEPQKQLAIINSKSGMSVRSSFQVMRQIAGGSKNLGYCFQDLKNFLTTVRQKEMVIGDATIIQEYLRNEALRNPSFYYDIQVDSEENIASIFWSDAIMQQDYELFGDLISFDTTYRTNTEYRPLAPFLGFDNHRKSVLFGCALLYDETSASFDWLFTTFLKCMKNKKPITIYTDQASALMKSVPNIFPDVFHGLCSWHMGENAKSNLGSRCNGAFLDELHHLVSNVDDEAEFDFNWNKMLQNCFGGKATSEFTWLVQIHRNRTQWSSAWVKSHFTAGLKTTQLSESFNAFLRHFLQPDHSLVQFFIHFNVMVEKMRDNHADCDFKAANTRPRNNYPNSQLMRSVVAKYTPASFAFIHKQYDLSFKYYYEEDMSRSSISNRVFKVFTIQLVRDADEMDFDNDAAANVYMSVEEVPENLLPNDQDPLRLDERVVTVDIGNKIFTCTCRMFENRGFLCRHVFKILDFLGSSVQYQSLKSIPDHYILKRWTKGIRPSLDALKPISIGGIQDTTFAQRYQQASGVMLQIITRVCMDPDACQFFLNAAIECGKQAEELIVAKGVSGQPSSSRSASCKDTSVAEPLVVDSSVKKFKKRPNPIRAKKRLKSDYELARERQRFIAQRKKQKKEEDAAKLALTINNVD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01353 797 SMART 26again6 600 627 IPR006564 GO:0008270
Vivi1g01353 797 Pfam SWIM zinc finger 593 617 IPR007527 GO:0008270
Vivi1g01353 797 ProSiteProfiles Zinc finger SWIM-type profile. 591 625 IPR007527 GO:0008270
Vivi1g01353 797 Pfam MULE transposase domain 268 359 IPR018289 -
Vivi1g01353 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 703 IPR031052 GO:0006355
Vivi1g01353 797 Pfam FAR1 DNA-binding domain 38 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01353 Vivi-Chr1 28137299 28141264 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g01353 FAR1 5.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01353 - - vvo:131626470 1363.21