LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g01348	ATGGTGAGAGTCAGTGTGTTGAACGATGCTCTAAAGAGTATGTACAATGCTGAGAAAAGAGGAAAGCGCCAAGTCATGATAAGGCCATCGTCTAAAGTTATCATCAAGTTCCTCATTGTTATGCAGAAGCACGGATATATTGGGGAGTTTGAGTATGTTGATGATCATAGATCTGGTAAGATTGTTGTTGAGTTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTTGGTGTCAAGGAGATTGAAGGTTGGACTGCCAGACTTCTTCCATCTAGACAGTTTGGTTACATCGTTTTGACCACTTCTGCTGGCATCATGGATCACGAAGAGGCTAGGAGGAAGAATGTTGGTGGCAAGGTCCTTGGCTTCTTCTACTGA	393	0.4275	MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY	130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g01348	130	SUPERFAMILY	Ribosomal protein S8	4	130	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Vivi1g01348	130	FunFam	40S ribosomal protein S15a	1	69	-	-
	Vivi1g01348	130	PANTHER	40S RIBOSOMAL PROTEIN S15A	1	129	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vivi1g01348	130	FunFam	40S ribosomal protein S15a	70	130	-	-
	Vivi1g01348	130	Pfam	Ribosomal protein S8	7	130	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vivi1g01348	130	Hamap	30S ribosomal protein S8 [rpsH].	2	130	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vivi1g01348	130	ProSitePatterns	Ribosomal protein S8 signature.	100	117	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vivi1g01348	130	Gene3D	-	70	130	-	-
	Vivi1g01348	130	Gene3D	-	1	69	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g01348	Vivi-Chr1	28082726	28084362	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g01348	1	130	Cytoplasmic Ribosomal Protein Gene Family	AT5G59850	99.231	3.20e-94	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g01348	K02957		-	aew:130763483	261.536