Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01332 ATGGACATGGTTAAATGGGGAATGGTCAAGGATGTAGGAAGAAGTATGAATGACCCTGCCAATGGTGATATGTTGGTGTCTACAAAAGGAAATTCGCCGAGCAGGTACAATAGTTGTGCGTTGATTATTCTTGAGTATATTTTCGACTTACGGTGTTTGAAGTCAAGTTTATCAGGTGAGGAAGGAGCAGAAGAATGGTTGCAAAGATGTGAAAAAAGTTGTAGATTGAGATGGATAAACTACTTGAGACCAGATTTGAAGAGAGGAATGTTTTCACAACAAAAGGAGAATCTTATTATTAGTCTTCATGAAATACTTGGAAATAGGTGGACTCAAATTGCAACACAATTACAAAGGAGAACAGATAATGAGATAAAAAACTTTTGGGATTCATGTTTGAAGAAGAGGCTAAGGAAGCAAGGGACTGACCCAGCTACACATAAACCACTATTCAATATTACTGAATCAGTTCTAAAGGAAGAGAATGAAAAATCATCAATGTTAATGGCGACACTGTCTCAACCTCAAAGAACTATCTTCACAGGAATATTATTCAGGAACACTTCTAATGAATGA 576 0.3663 MDMVKWGMVKDVGRSMNDPANGDMLVSTKGNSPSRYNSCALIILEYIFDLRCLKSSLSGEEGAEEWLQRCEKSCRLRWINYLRPDLKRGMFSQQKENLIISLHEILGNRWTQIATQLQRRTDNEIKNFWDSCLKKRLRKQGTDPATHKPLFNITESVLKEENEKSSMLMATLSQPQRTIFTGILFRNTSNE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01332 191 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vivi1g01332 191 SMART sant 87 135 IPR001005 -
Vivi1g01332 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vivi1g01332 191 SUPERFAMILY Homeodomain-like 68 142 IPR009057 -
Vivi1g01332 191 FunFam MYB transcription factor 89 150 - -
Vivi1g01332 191 Gene3D - 90 166 - -
Vivi1g01332 191 Gene3D - 50 87 - -
Vivi1g01332 191 PANTHER MYB DOMAIN PROTEIN 55 67 166 - -
Vivi1g01332 191 Pfam Myb-like DNA-binding domain 88 130 IPR001005 -
Vivi1g01332 191 CDD SANT 91 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01332 Vivi-Chr1 27793967 27795554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01332 67 151 MYB Transcription Factor Family AT5G26660 77.647 1.11e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g01332 Myb_DNA-binding 4.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01332 K09422 - cit:102617960 164.466