Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01289 ATGGCTTCCTCCCCCTCAAACACCACTCTTCCCTCTCTTCCAGATCCACCCATCGCCGTCCCCCTCGCTCTCCCAGCCCCACTCCCTCTCCCACCTTCCACCCGTCGCCTTCCTCCTCCCTGCTGGTCCCCCGACGAAACGCTCGCTCTCATCGATTCGTATCGCGACAAATGGTACTCTCTGGGCCGTGGAAACCTGAAGGCCACGCACTGGCAGGAAGTGGCTGACGCTGTTTCGCATCGTTGCCCTAACGCTTCTCCCGCGAAAACTCCCGTTCAATGCCGGCATAAGATGGAGAAGCTGAGAAAGCGTTATCGCACTGAGATTCAACGTGCTCGCTCACTTCCTGTCGCTCGATTTAACTCCGCTTGGGTTCACTTCAAACTCATGGATTCCATGGAGAAAGGTCCTTCTCCGATTAAATCTGAAAACAACGATTCGGATAGCCCCGATGATGACGAAGAAGAAGATCAGGATCAAGATCTGTACATGGATATCAAAAACGGCCACGGATCTAACACTAGAAGCATCAATAAACTATATAGGAACGGTTTCGGTGGTGGTGGTGGTGTTGGTGTTAGTGGAGGGTTCAGGATTAGGTTTCCGAATGCACAACCTGAATCAAGATTTCCTCCAGATCAGAAGTATAACCCTAACTTGCATCACAACTACGGGACTCCGATGCCGCCTCCTCCGGCTGCAACGAAGGGATTAGGTAATAAAAGAGAAAGAGATCCATTGGGAGAGGTTGTATCTGCGATCAAGGTATTGGGAGACGGGTTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCAAGGGAGATTGAAGCAATGCGAATGGATATGGAAATGAAGCGCACTGAGATGATTCTCGAATCTCAGCGACGAATTGTGGAGGCGTTTGCCAAAGCTGTTTCCGATGATAACAACAACGGAAGCAACCACAAGATGAAGCCTGTTAATAAGAGAATTCCATCACCACAACAACCATGA 993 0.5015 MASSPSNTTLPSLPDPPIAVPLALPAPLPLPPSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSHRCPNASPAKTPVQCRHKMEKLRKRYRTEIQRARSLPVARFNSAWVHFKLMDSMEKGPSPIKSENNDSDSPDDDEEEDQDQDLYMDIKNGHGSNTRSINKLYRNGFGGGGGVGVSGGFRIRFPNAQPESRFPPDQKYNPNLHHNYGTPMPPPPAATKGLGNKRERDPLGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMDMEMKRTEMILESQRRIVEAFAKAVSDDNNNGSNHKMKPVNKRIPSPQQP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01289 330 Coils Coil 95 115 - -
Vivi1g01289 330 FunFam Trihelix transcription factor ASIL2 42 107 - -
Vivi1g01289 330 ProSiteProfiles Myb-like domain profile. 42 102 IPR001005 -
Vivi1g01289 330 MobiDBLite consensus disorder prediction 224 245 - -
Vivi1g01289 330 Gene3D - 42 107 - -
Vivi1g01289 330 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01289 330 Pfam Myb/SANT-like DNA-binding domain 40 133 IPR044822 -
Vivi1g01289 330 SMART 118neu2 49 138 IPR006578 -
Vivi1g01289 330 MobiDBLite consensus disorder prediction 304 330 - -
Vivi1g01289 330 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 33 307 IPR044823 -
Vivi1g01289 330 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01289 Vivi-Chr1 26861250 26862698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01289 41 133 Trihelix Transcription Factor Family AT3G14180 36.559 2.25e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g01289 Myb_DNA-bind_4 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01289 - - mtr:25494055 464.536