Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01277 ATGGGTTGTTCCCATGGCAAGTGTTGCTGTGTGAAATCTTCTTCATTGGATAGCGATTCTAGAAAAACTGGGTTTCATCATAGTCATAGGAAGAACATACTCGCTCAGAGAGTACTGAAACATGTTCCTGTTCCTTCCCACAACTTTGTTTTGGAATATACCTTTCTCACACTGCGAGGTTACTACCCTGATTCACTGGATAAACAAAACCAAGATAATTTTTGCATCAGGACTCAAATTCAAGGTAACCCCAATATTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGGAGTCAGTGTTCAAACTTTGTTCGGGATAGGTTGGTAGAGAAATTATCTAATGACCCTGCATTGGTGGAGGACCCCGTTCAAGCTTACAAATCTGCCTTTTCGGCAACAAATCATGAATTGCATACTAGTGACATTGATGATTCTATGAGCGGCACAACGGGAATTACAGTGCTTGTTATTGGAGATACCCTCTATGTTGCTAATGTTGGTGATTCGAGAGCTGTGCTAGCTGTTAAGGATGGGGATCGAATTATTGCACAGGACTTGTCCTCTGATCAGACTCCATTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGAGCAAGAGTGTTGAGTGTTGATCAAGTGGAAGGGCTCAAGGATCCAAGTATCCAACATTGGGGTAACGAAGAGAGTTGGGATGGTGATCCTCCGAGATTGTGGCTTCCAAATGGGATGTATCCAGGAACTGCATTTACAAGGAGTTTAGGGGATAGGTTGGCGGAGACAATTGGCGTGGTTGCTACTCCAGAGGTGTCAACTTTTCGGCTTAATCCTAATCACCTCTTCTTTGTTGTTGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGACAGCAAAATTTACAGATCCCCGTGATGCATGTGCGGCTATTACCGAAGAGTCATATAAACTATGGTTGGAACTTGTGAATCGAACAGATGACATCACAATTATCATTGTCCAGATTAAAGGATTTTCTAATTCTAGTACATCTGGAGTTGAATCAAGTGAGGCCAATGTTGGTACTGCACTGAGGAGCCCAGACACAGTTGTTCTCTCTCAATCATGTCAAAGATCAACTGAATCATGA 1149 0.4204 MGCSHGKCCCVKSSSLDSDSRKTGFHHSHRKNILAQRVLKHVPVPSHNFVLEYTFLTLRGYYPDSLDKQNQDNFCIRTQIQGNPNIHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPALVEDPVQAYKSAFSATNHELHTSDIDDSMSGTTGITVLVIGDTLYVANVGDSRAVLAVKDGDRIIAQDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPSIQHWGNEESWDGDPPRLWLPNGMYPGTAFTRSLGDRLAETIGVVATPEVSTFRLNPNHLFFVVASDGIFEFLSSQTVVDMTAKFTDPRDACAAITEESYKLWLELVNRTDDITIIIVQIKGFSNSSTSGVESSEANVGTALRSPDTVVLSQSCQRSTES 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01277 382 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 47 344 - -
Vivi1g01277 382 SMART PP2C_4 48 340 IPR001932 -
Vivi1g01277 382 PANTHER PROTEIN PHOSPHATASE 70 341 IPR015655 GO:0004722|GO:0006470
Vivi1g01277 382 SUPERFAMILY PP2C-like 41 344 IPR036457 -
Vivi1g01277 382 Pfam Protein phosphatase 2C 72 320 IPR001932 -
Vivi1g01277 382 CDD PP2Cc 68 342 IPR001932 -
Vivi1g01277 382 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Vivi1g01277 382 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Vivi1g01277 382 Gene3D - 54 344 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01277 Vivi-Chr1 26715444 26718814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01277 1 347 PP2C-type Phosphatase Gene Family AT3G06270 68.012 3.44e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01277 - - vvo:131632021 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01277 1 26715444 26718814 Vivi1g01277 1 26715444 26718814 ECH
Vivi1g01277 1 26715444 26718814 Vivi4g03417 4 150967965 150971093 PCT