Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01259 ATGGGAAGATATCGTAGCCGTAGCAGAAGCTACAGCCCTCGCCGCCGTAGCAGAACCCCACCTCGCGGTCGCAAGCGTTATGACGATGATCGCTATCCTGATTCCAGGTCTCGCAGAGACCGTCGTTCTCCTCTCCCTTCTGGCTTACTCGTCCGTAATCTCCCTCTTGATGCTAGACCTGAAGATCTTAGGGGGCCATTTGAACGCTATGGTCCTGTGAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAACCTCGTGGCTTTGGATTCGTGAAATATCGATATGGTGAAGATGCAGCAGAGGCAAAGCAACATCTGAATCACAGTGTCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACCCCTCAGGAAATGCGTGTCACTTCTCATGGAAGCCGAAATGGAGGTGGTAGCAGAAGGAGAGCTCGGTCAAGATCCCCACGACGTCGTTATCGATCCTACTCTAGGTCTCCATCACCTGCCAGGGACAATTCAAGGGGTAGGGGTGGTTATTCTCCAGAGCGTTCAAGATCTTATTCTAGGTCTGTTTCTCCCGGCGGTGGGAAGGAAGACAAGAGGTCCCCTCGTGCCTCTCCTGGTGGTGGGAAGGACGACAGGAGGTCCCCTCGTGCCTCTCCCGGTGGTGGGAAGGACGACAGGAGGTCCTTTCGTGTCTCTCCGGGCGGTGGGAAGGATGATAGGAGATCCCCCCGTTCCTCTCCTGTTGTTGGGAAGGACGACAGGAGATCCTCTCGCGCCTCTCCGGGTGGTGGGAAGGATGACAGGAGGTCCCCTCGTGCCAGGGAGAATGGTCGAAGTCCAGATGTTAGGAAAGATCAGTCACCTACCAGATCTGAGAGCCCTAGGGACAAAGATCGAAGTCCTTTAAGGTCTCGTTCGCGGTCATACAGTCCACGCTGA 945 0.5354 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDRYPDSRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHSVIGGREIRIVFAEENRKTPQEMRVTSHGSRNGGGSRRRARSRSPRRRYRSYSRSPSPARDNSRGRGGYSPERSRSYSRSVSPGGGKEDKRSPRASPGGGKDDRRSPRASPGGGKDDRRSFRVSPGGGKDDRRSPRSSPVVGKDDRRSSRASPGGGKDDRRSPRARENGRSPDVRKDQSPTRSESPRDKDRSPLRSRSRSYSPR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01259 314 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 6 195 - -
Vivi1g01259 314 MobiDBLite consensus disorder prediction 1 49 - -
Vivi1g01259 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Vivi1g01259 314 MobiDBLite consensus disorder prediction 194 307 - -
Vivi1g01259 314 SUPERFAMILY RNA-binding domain, RBD 49 153 IPR035979 GO:0003676
Vivi1g01259 314 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g01259 314 MobiDBLite consensus disorder prediction 22 45 - -
Vivi1g01259 314 MobiDBLite consensus disorder prediction 125 314 - -
Vivi1g01259 314 MobiDBLite consensus disorder prediction 144 160 - -
Vivi1g01259 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Vivi1g01259 314 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Vivi1g01259 314 Gene3D - 16 161 IPR012677 -
Vivi1g01259 314 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01259 Vivi-Chr1 26424292 26428564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01259 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.95e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01259 K12900 - gmx:100788749 235.343