Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01254 ATGGACTGCAACAAAGAAGAGGCCTTAAGGGCCAAGGGCATTGCTGAAAAGAAGATGGAAAACAGGGATTTCGCAGGGGCTCGTAAATTTGCTCTTAAGGCTAAGCAGTTGTATCCTGTTTTGGATAATATAGCCCAAATGCTCGTTGTTTGTGATGTGCACTGCTCTGCAGAGCAGAAAGTGTTCGATAATGAGAAGGACTGGTATGGAATTCTTCAGCTAGAACACACAGCTGGTGATGCAATGATTAAGAAGCAGTACCGAAAGTTTGCTCTTCAGCTTCATCCTGATAAAAACAAGTTTTCTGGTGCTGAGTCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTGCTTTCAGACACCATAAGCCGAAATAGGTATGACATGAAGCTTAGGTTGAATAAAGCTTTTATGCCTCGTCAAAATCAACAAAAGGTTCCTACGAATTTCAATTCTGCGACGAAAAACAATGTTGCGCCCAACTTTACAAACTCAAACACCCAAAAGCAGCAGAAAAATAAGCAGCCCGCACAGCAGCAGCAAAATAAGCAGCCCGCACAGCCGCAGCAAAATAAGCAGCCCGCTCAGCAGCAGCAAAACGGTGTGCGCCGCACTTTTTGGACTGCCTGCCCATTTTGCACCGTGAGGTATCAGTACTATAGAGAAGTTATAAATAAATCTATTCGCTGTCAACAATGCCATAGGCCCTTCGTTGCGTATATCGTGGACGGGCAAGGTTCGTCTCAAACAACTAACTCAAGTCAGCAAGCATTTGGCCAGCAGAAAGATGGTTTGAATAATGGTACTCAGAAGGAAAATATCGGATCTCAAAGCAGCTCGCATACTGAGAAGTCCAATACAAGGCCTTTCAACAATAAAGACCCTGTTGATGTCTCGGGAAAGCCAAGTGTGAAGAGAAAGTGGATTTCAGTGGAAGAACTCAATCTAAGCTCTGATTCTTCGAGCAGTAGTGATTCTGATTCTGACAGTGAAATATTTGCTGGTGTGAATGGCTTTCCAGGTGTAAAAAACCATTCAACTGGGCAGCCAAGCAGATCTGTGCGACAGAAGCCTAATGTTTCCTACAGTGATAATATGAGCGTCAATGACTTATTAAAACCTTCAAAAAGGGGTGAGGAGAATGGAGCACCTTGTGTTAATGGTCAAATTCATAACGAGACAGCTAAAATGAATGATCAGAATGGTTCAGCAGCTGATCCAAAAGATGAACATGAAAAGTTAAAGCAGAAGAAACAAGATTTTCATTCAAAAGAGAGCTCACTGAATAGAAATGAGAGGAAAAATTGGGCAAATGGAAAAGAAGCTGTGGGTGGATCAAAGCAGATGGGTGAAACTTCAGAGCATTTTTCTCCAAATTCAATCTATAAGGCAACAAATCATCCTAATGCTAATGGATATCCCAAAGCAGAGCATTCTTCTCCAAATTCAATCTCTAAGGCAACAAATTATCCCAATGCTTATGTCTATCTCAATGCTGAGTTCAGCGATTTTGACAAGGACAGAAAAAAAGTATGTTTTGCGCCTGGGCAGATTTGGGCTATGTATGATACAACAGATGGCATGCCTAGATTCTATGCTTTAATCAGAGAAGTTCTCTCTCCTGGATTTCATTTGAAGGCAACCTGGCTTGAACCACATCCAGATGACCATGATCAAATCAAGTGGGTAGATAAGGAATTGCCTGTGGCTTGTGGGAAATTTAAACTTGGGACCACTGATATCATTAAAGATCAACTGATGTTTTCTCATCTAGCTCAGTGTGATAAGATTGGCCGCAATACTTTTAAAGTCTATCCTAGAAAGGGAGAAACATGGGCTCTTTTTAAAAATTGGGATATCAAATGGTACATGAATGCAGAATTTCCTAAGCATTATAGATATGAGTTTGTGGAAATCTTGTCAGATTATGTCGAAGGTGAGGGTGTATCTGTTGTGTACTTGGGGAAGTTGAAAGGTTTTGTAAGCCTCTTCTTTCAAATTATGAAAGAAGATAACCGGTCATTTCAAATTCCATCCCGGGAGTTATTTAGGTTTTCTCACAGGATTCCATCTTTTAAAATGACTGGTCAGGAAGGAGCAGGCGTTCAATTAGGATATTTAGAATTTGATCCTGCATCTATACCATTGAATCTTGAAGAATTTTCTGTTCCTCGAAATTTGGATGTGAATGCAAAATCTTCAAAAAAATCAAAACCCTTTATGAGGCCGGAAGAAATTGCATCCACTTCTAAGGTTAATATTGAACCAAGCAATCCGACTGAGATGAAAGATTCTCTTGATGATATGGATGACGGTCATGCTACTCCGACTTCAACCCTTGATGCATTTGAAATTCCAGATGCTCAATTCTTCAACTTTGAAACTTGGAGGTCCCTTGATAAGTTCCAGATTGGTCAAATATGGGCATTTTACAGCGATGAAGATGGAATGCCAAAATACTATGGTGAGATTAAAAAAATTAAGACTAGCCCTGACCTTGAGTTGCATGTTAATTGGCTTGCTTGCTCCCAGCTACCAGAGGGCACCTCTAAATGGATAAATGAAGATATGCTTACTACCTGTGGCAGATTTAGAATCATGAAAACAAATGATTTTTTCTCGATTTACAATAGCCTGTCTTGTATTTCACATCAAGTACGAGCTGAGGCTATCGGTAAGAGTTACGCCATCTATCCAAGAAAAGGTGAAGTATGGGCTGTATATAAGAAATGGTCAAGTGACTTCAAGTGTTCTGACCTGAAAAATGTGGAGTATGACATAGTGGAAGTTCTTGAAGAAGGTAGTTGTTTTATAGAGGTTTTAGTTTTGGAGAATGTTAGTGGATATCGCAGCGTCTTCAGATGCAAAGTAGTTGATGGTTGTTCTGTCAAAGTGAGAATGCCCAGAAAATATTTGCTTGCTTTCTCTCACCAAATTCCAGCTTTCAAACTGACACAAGAGCATGGCATCCTCAAGGGCTTCTGGGAGCTTGATCCAGGTGCGCTACCACCTTCGTTCCTTTGGCCTTAG 3030 0.4069 MDCNKEEALRAKGIAEKKMENRDFAGARKFALKAKQLYPVLDNIAQMLVVCDVHCSAEQKVFDNEKDWYGILQLEHTAGDAMIKKQYRKFALQLHPDKNKFSGAESAFKLIGEAQRVLSDTISRNRYDMKLRLNKAFMPRQNQQKVPTNFNSATKNNVAPNFTNSNTQKQQKNKQPAQQQQNKQPAQPQQNKQPAQQQQNGVRRTFWTACPFCTVRYQYYREVINKSIRCQQCHRPFVAYIVDGQGSSQTTNSSQQAFGQQKDGLNNGTQKENIGSQSSSHTEKSNTRPFNNKDPVDVSGKPSVKRKWISVEELNLSSDSSSSSDSDSDSEIFAGVNGFPGVKNHSTGQPSRSVRQKPNVSYSDNMSVNDLLKPSKRGEENGAPCVNGQIHNETAKMNDQNGSAADPKDEHEKLKQKKQDFHSKESSLNRNERKNWANGKEAVGGSKQMGETSEHFSPNSIYKATNHPNANGYPKAEHSSPNSISKATNYPNAYVYLNAEFSDFDKDRKKVCFAPGQIWAMYDTTDGMPRFYALIREVLSPGFHLKATWLEPHPDDHDQIKWVDKELPVACGKFKLGTTDIIKDQLMFSHLAQCDKIGRNTFKVYPRKGETWALFKNWDIKWYMNAEFPKHYRYEFVEILSDYVEGEGVSVVYLGKLKGFVSLFFQIMKEDNRSFQIPSRELFRFSHRIPSFKMTGQEGAGVQLGYLEFDPASIPLNLEEFSVPRNLDVNAKSSKKSKPFMRPEEIASTSKVNIEPSNPTEMKDSLDDMDDGHATPTSTLDAFEIPDAQFFNFETWRSLDKFQIGQIWAFYSDEDGMPKYYGEIKKIKTSPDLELHVNWLACSQLPEGTSKWINEDMLTTCGRFRIMKTNDFFSIYNSLSCISHQVRAEAIGKSYAIYPRKGEVWAVYKKWSSDFKCSDLKNVEYDIVEVLEEGSCFIEVLVLENVSGYRSVFRCKVVDGCSVKVRMPRKYLLAFSHQIPAFKLTQEHGILKGFWELDPGALPPSFLWP 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 342 370 - -
Vivi1g01254 1009 Pfam DnaJ domain 67 128 IPR001623 -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 387 401 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 247 303 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 315 484 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 315 331 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 136 201 - -
Vivi1g01254 1009 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vivi1g01254 1009 Gene3D DnaJ domain 53 156 IPR036869 -
Vivi1g01254 1009 Pfam Domain of unknown function (DUF3444) 494 698 IPR024593 -
Vivi1g01254 1009 Pfam Domain of unknown function (DUF3444) 782 987 IPR024593 -
Vivi1g01254 1009 CDD DnaJ 67 120 IPR001623 -
Vivi1g01254 1009 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vivi1g01254 1009 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vivi1g01254 1009 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 450 484 - -
Vivi1g01254 1009 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 724 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 403 437 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 247 293 - -
Vivi1g01254 1009 MobiDBLite consensus disorder prediction 137 201 - -
Vivi1g01254 1009 SMART dnaj_3 66 123 IPR001623 -
Vivi1g01254 1009 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01254 Vivi-Chr1 26371404 26376535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01254 4 133 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.222 2.33e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01254 - - psat:127073362 1773.83