Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01247 ATGACTGGAGAAGGAGCTCTATACGAGAAACTCGCGACGATGATGACCTCAGACCACGCTTCCGTAGTGTCGCTAAACATATTTGTCGCTCTTCTTTGTACTTGCATCGTCATTGGTCATTTGTTAGAGGAGAATCGTTGGATTAATGAATCCATCACTGCTCTTCTCATTGGTTTGTGTACTGGAGTGTTAATATTGTTTACGACCGGAGGAAGAAGCTCGCATATAATGGTGTTCAGTGAAGATCTTTTCTTTATCTACCTTCTCCCCCCCATCATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTTTTCGGGGCAATTGGTACACTCATATCATTCTGCATCATATCATTAGGTGCCATACACTTCTTTGAAAAATTAAATATCGGCTCCCTCAAGATCGGAGATTATCTCGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAACCAGGACGAGACGCCTTTACTATACAGTTTAGTGTTTGGAGAAGGAGTAGTAAATGATGCAACTTCTGTAGTACTCTTCAAAGCAATTCAGAATTTCGACCTCTCCCACATTGATTTAACCACTGCTTTAGACTTAATCGGAAACTTTTTGTATCTATTCATAGCGAGCACTGTGTTAGGAATCTTTGTTGGATTGCTTAGTGCATATATCATTAAAAAGCTCTACTTTGGAAAGTTGATAAGACACTCTACCGATCGCGAGGTTGCTCTGATGATACTAATGGCTTACCTTTCCTATATGCTAGCTGAATTATTTTCGTTAAGTGCGATTTTGACTGTGTTCTTCTGCGGCATTCTTATGTCGCATTATACCTGGCATAATGTGACAGAAAGTTCAAGAGTAACAACAAAGCATACTTTTGCGACTATGTCATTCATTGCTGAAATCTTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATCGAGAAATGGCGTTTTGTAAGTCAGAGTCCGGGAAAATCAATTGGAGTCAGTTCGTTGTTGTTGGCGCTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTTTCCTTCATATCCAACTTGACTAAGAAGTCTCAATCTGAGAAAATTGAGTTTAAGCAACAAGTGACGATTTGGTGGGCTGGTCTGATGCGTGGCGCTGTTTCCATTGCACTTGCTTACAATCAGTTTACTAGGCTCGGACATACGAAATTGCGTGAAAATGCGATCATGATCACTAGTACTATTAGTGTTGTACTCTTCAGCACAATGGTGTTTGGGTTATTGACGAAGCCACTTGTGAGGTTGTTGCTTCCTTCATCTAAACACAATATAATCAGCATACAGTCAACACCATCGAGCCCCAAATCATTCAGTGTGCCACTTCTTGGCAATGAAGAGGATGATGTAGGGGGCAATGATGGGACACAGAGACCAAACAGATTGCGTTTGCTCCTTCGGATTCCAAGCCATGGGGTGCATCACTACTGGCGCAAATTCGACAATTGTTTCATGCGACCTGTCTTTGGTGGCCGGGGTTTTGTACCATATGTTCCTGGTTCTCCCATTTAA 1602 0.4126 MTGEGALYEKLATMMTSDHASVVSLNIFVALLCTCIVIGHLLEENRWINESITALLIGLCTGVLILFTTGGRSSHIMVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFEKLNIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALDLIGNFLYLFIASTVLGIFVGLLSAYIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFCGILMSHYTWHNVTESSRVTTKHTFATMSFIAEIFIFLYVGMDALDIEKWRFVSQSPGKSIGVSSLLLALILVGRAAFVFPLSFISNLTKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTISVVLFSTMVFGLLTKPLVRLLLPSSKHNIISIQSTPSSPKSFSVPLLGNEEDDVGGNDGTQRPNRLRLLLRIPSHGVHHYWRKFDNCFMRPVFGGRGFVPYVPGSPI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01247 533 Gene3D - 144 196 - -
Vivi1g01247 533 Pfam Sodium/hydrogen exchanger family 27 445 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vivi1g01247 533 NCBIfam sodium/hydrogen exchanger 3 26 448 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi1g01247 533 PRINTS Na+/H+ exchanger signature 83 94 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi1g01247 533 PRINTS Na+/H+ exchanger signature 97 111 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi1g01247 533 PRINTS Na+/H+ exchanger signature 152 162 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi1g01247 533 PRINTS Na+/H+ exchanger signature 112 120 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi1g01247 533 PANTHER SODIUM/HYDROGEN EXCHANGER 16 519 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01247 Vivi-Chr1 26301479 26304624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01247 1 532 Antiporters AT3G05030 73.420 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01247 - - ccaj:109808409 907.131