Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01246 ATGGGGTGTGTGTTTGGGAAAGAGGCTTCACAGAGGAGGAAAGAGGAAGTGGAAGTTGGTAAGGTAGAGGAGGTTGTGTGTGAGGTTCAAATTCAAAATGGTGAGAGTGAGAATGGAGAGGAGGAGGAGGAGAAGAGGAGGAGACAAAGGGAAAGGAGGGAGAGGAGACGATCTTTGAAGGCGAATCCGAGATTGAGCAATCCACCTAACTATATACATGGTGAGCAAGTGGCTGCAGGGTGGCCTTCTTGGCTCTCCAAGGTTGCTGGAGAAGCTATACATGGATTGATGCCTCGAAGGGCCGATAGTTTTCACAAGATTGATAAGATTGGACAAGGTACATATAGCAATGTTTACAAAGCTAAGGATACTTTAACTGGGAAAATTGTTGCATTAAAGAAGGTCCGTTTCGACAATTTAGAGCCGGAGAGTGTGAAATTCATGGCCAGAGAAATTCTTATTCTGCGTCGTCTGGATCATCCCAATGTTGTCAAACTAGAAGGTTTGGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTGGCCGGACTCTCTACGAGCCCGGATATTAAGTTTACGGTGTCTCAGATTAAATGCTACATGCATCAGCTATTGTCTGGACTAGAACACTGTCACAACCGTTATGTGCTGCATCGTGATATAAAGGGATCGAACCTTCTTGTTGACAATGACGGAGTTCTTAGGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCAACCTATGACTAGTAGGGTGGTTACTTTATGGTATCGTTCTCCCGAACTTCTTCTAGGAGCCACCGATTATGATGTAGGCGTGGATCTGTGGAGTGCTGGCTGTATCCTTGGTGAATTGTTGGCTGGAAGGCCTATTATGCCTGGTCGAACCGAGGTGGAACAGCTGCATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAGAAGGGCAAAGCTTCCACATGCTACCATTTTTAAGCCTCGACAATCATATAAGCGGTGCATTGTAGAGAAGTTCGAAGATTTCCCGATATCATCATTGCCATTAATTGAAACCCTTCTAGCAATCGATCCAGCAGAACGTCAAACCGCCACTGCTGCATTGCACAGCGAATTCTTTACAACGCAGCCTTATGCTTGTGAACCCTCTAACCTTCCAAAATATCCTCCGAGTAAGGAGATGGATACAAAGCTAAGGGATGAAGAAGCTAGAAGATTCAGAGCCGCCGGCAAAGGTAATGCTGTTGGCAGTAAGAAGCCGCGTTTGCGTGATCGGAGTGGTAGGGGAATCGCAGTTCCAGAGGTCAATGCTGAGTTGCAAGAAAATATTGATAGATGGAGATTGGTAACGCGCGCAAACGCGAAGAGCAAGAGCGAGAAGTTTCCTCCACCTCATCAAGATGGAACTTTAGGCTATCCTCTGAGTTCTTCATATCACATTGAACCAGTTTTTGATCCTCCTGATATTCCAATCAGTTCCACAGACTTCTCATATCATAAAGCAAGTATTCAGACCTGGTCCGGTCCATTGATGGAGCCGAGGATGAGTGCGCCGAGGAGAAAGAAGAACAAGGCAGGTGACCAGCACATGAGATCAAAGTCATCGAAGAGAAACATAAATAGATAG 1671 0.4488 MGCVFGKEASQRRKEEVEVGKVEEVVCEVQIQNGESENGEEEEEKRRRQRERRERRRSLKANPRLSNPPNYIHGEQVAAGWPSWLSKVAGEAIHGLMPRRADSFHKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPDIKFTVSQIKCYMHQLLSGLEHCHNRYVLHRDIKGSNLLVDNDGVLRIADFGLASFFDPNHKQPMTSRVVTLWYRSPELLLGATDYDVGVDLWSAGCILGELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWRRAKLPHATIFKPRQSYKRCIVEKFEDFPISSLPLIETLLAIDPAERQTATAALHSEFFTTQPYACEPSNLPKYPPSKEMDTKLRDEEARRFRAAGKGNAVGSKKPRLRDRSGRGIAVPEVNAELQENIDRWRLVTRANAKSKSEKFPPPHQDGTLGYPLSSSYHIEPVFDPPDIPISSTDFSYHKASIQTWSGPLMEPRMSAPRRKKNKAGDQHMRSKSSKRNINR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01246 556 PANTHER CELL DIVISION PROTEIN KINASE 102 392 - -
Vivi1g01246 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vivi1g01246 556 MobiDBLite consensus disorder prediction 519 556 - -
Vivi1g01246 556 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01246 556 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vivi1g01246 556 FunFam probable serine/threonine-protein kinase At1g54610 91 186 - -
Vivi1g01246 556 MobiDBLite consensus disorder prediction 530 549 - -
Vivi1g01246 556 Gene3D Phosphorylase Kinase; domain 1 92 186 - -
Vivi1g01246 556 Gene3D Transferase(Phosphotransferase) domain 1 187 426 - -
Vivi1g01246 556 CDD STKc_CDK9_like 104 388 - -
Vivi1g01246 556 Coils Coil 31 51 - -
Vivi1g01246 556 FunFam probable serine/threonine-protein kinase At1g54610 187 428 - -
Vivi1g01246 556 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01246 556 MobiDBLite consensus disorder prediction 30 71 - -
Vivi1g01246 556 SUPERFAMILY Protein kinase-like (PK-like) 98 393 IPR011009 -
Vivi1g01246 556 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01246 Vivi-Chr1 26258170 26261474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01246 99 426 Core Cell Cycle Gene Families AT5G10270 49.709 3.24e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1g01246 Pkinase 3.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01246 K08819 - gmx:100814207 892.493