Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01239 ATGGAAAACCCTTCACCTTCTTCAACAACCATAATGGGTAACACAAAACGTGCTCGAGAATTGGGTGCTAGTGCTACTACAAAACCCGAAGAAGTTCTTAAAGTTGAACGTGGACGAAGGAAGAAAATGTCTCAAATGTTCACTCAACTTGTCACCACTGTCCCTGCTCTCTTACCTACAGCTACTAGGGAAGTGATTATAAACGAAACAATTGGGTACATTAAGGAACTCGAGAGCAAGAAGAAAATGTTGGAGGAGATTAAGGAATCCAAAGTTGAAGGGAGTTTCAATTTGTTGGTTCCGTGTCGGAATAGAAATTGCTCTGTTTCTGTTACGGTTTCGAACAATGTGGCTTTCTTTGGGATTGAATCGGTGGCGAAACCAGGTTTGGTTATTGTGATTTTGGAGGTATTTTTTAAGAATCAAGCGGAGATTTTAGCCGCGAATGTTTCTGTTAATGATGGAAAGTTGAGATTGGCGATTACTGCGTTGGTTCAAGATGGTATTGATCATGGTAACAGTGGGCGTATTGAGAAGATTAAGAGAGAGATTATGGGTTTGTAG 564 0.406 MENPSPSSTTIMGNTKRARELGASATTKPEEVLKVERGRRKKMSQMFTQLVTTVPALLPTATREVIINETIGYIKELESKKKMLEEIKESKVEGSFNLLVPCRNRNCSVSVTVSNNVAFFGIESVAKPGLVIVILEVFFKNQAEILAANVSVNDGKLRLAITALVQDGIDHGNSGRIEKIKREIMGL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01239 187 MobiDBLite consensus disorder prediction 1 15 - -
Vivi1g01239 187 CDD bHLH_AtbHLH_like 36 85 IPR045239 -
Vivi1g01239 187 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 35 163 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vivi1g01239 187 MobiDBLite consensus disorder prediction 1 28 - -
Vivi1g01239 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 77 IPR011598 GO:0046983
Vivi1g01239 187 Gene3D - 23 93 IPR036638 GO:0046983
Vivi1g01239 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 94 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01239 36 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 26.667 4.85e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g01239 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01239 - - psat:127073348 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01239 1 26202864 26204440 Vivi1g01239 1 26202864 26204440 ECH