Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01236 ATGGGTAGAACTTCCAAATCTCAGCCTTCAAGCGCCTCCAATTCCGAGGAAGAAGAAGAAGAAGAGGTTGAGAACGTTAACGACCAGATCGATGAAGACGATGACGAACTCGAAGCCGTTGCTCGTTCCGCTAGCTCCGACGATGATGACAATGTGCCGGATGAAGATGAAGCCGGCGAGTACGCCGAAGATGATGATAATCAGGATGAAGGCAATGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGATTGAGGGAACTGGAGAGGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCGCAAAATGCGTCTATTGATGCTTCCATGAACACTAAAGGGAAAGGACGATTGAAGTATCTGTTGCAGCAAACTGAGCTGTTTGCTCATTTTGCAAAAAGTGAGGAAGCTTCGTCTCAAAAGAAGACTAAGGGAAGGGGACGCCATGCATCAAAAATTACCGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGGCGGTTTAGGAAATACACGGCTGGTTACTCAACCCTCATGCATCCAAGGGAAAATGAGGGATTACCAACTTGCTGGGCTAAATTGGCTCATACGTTTGTATGAGAATGGCATAAATGGAATTTTAGCAGATGAAATGGGGCTTGGCAAAACTTTACAAACTATATCTTTGCTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTACGGGCAATAAAGTTCCTTGGTAGCCCTGATGAAAGGAAACATATAAGAGAGGACCTATTGGTTGCTGGAAAGTTTGATGTAGTTGTGACTAGTTTCGAAATGGTAATCAAGGAGAAGACTACATTGCGTCGGTTTAGTTGGCGTTACGTTATTATTGATGAAGCCCACAGGATCAAGAATGAGAACTCCCTCCTTTCCAAAACAATGAGATTATATAATACTAATTACCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTACACAAGGTCCTCCGGCCATTTCTTCTCCGGAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAGATGCAGAAACAATATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGAGAACGGAAACGTCTTCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACATAACAGGGGATCATCTCGTTACAAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTATCGTGGATACCAATATTGTCGCATAGATGGAAATACCGGCGGAGATGACCGTGATGCTTCCATTGAGGCTTTTAATAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCCACTCGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGCTGATTTACAAGCTCAAGATCGAGCTCACAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGGTTAGCTGAACAGAAGACTGTTAATAAGGATGATTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCCGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGACGACACCGCTGATTTGCTTGATTTTGATGATGAGAAAGATGAAAACAAAGTTGATTTCAAAAAACTTGTGAGTGATAACTGGGTTGAGCCATCAAGAAGAGAACGAAAGCGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAAGTGCTCCTACAAAACCAAAAGAACCCCGGATTCCTAGGATGCCACAATTGCATGATTTTCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTATCTAATGCAAGCACATCAGAAGAATCAGGTCAAAGACTCCATAGATGTTGATGAACCGGAAGAGGGGGGAGAGCCATTGACTGCAGAAGAGTCTGAAGAAAAGGAGCAGCTGCTAGAGCAGGGATTTTCGTCATGGAGCCGAAAGGATTTTAACACTTTCATTAGAGCATGTGAAAAATATGGCCGAAATGATATTACAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTTGAAATATATGCAGAAGTTTTCAAAGAGCGATACAAGGAATTGAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAGGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGGGGCATTTCGGACGTCACCCTTGTTTCGTTTTGACTGGTTTGTGAAGTCGCGCACAACTCAGGAACTAACAAGGAGATGCGACACCCTCATTCGGCTGGTGGAAAAAGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCTCCAAGAGTTCAACTCCATCAAAGCGTGTCTTGCCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATTACTATGTCAACTCGGGGAAGAAAAAGAAATAA 3189 0.412 MGRTSKSQPSSASNSEEEEEEEVENVNDQIDEDDDELEAVARSASSDDDDNVPDEDEAGEYAEDDDNQDEGNVNPEISKREKARLRELERLKKQKIQEILDAQNASIDASMNTKGKGRLKYLLQQTELFAHFAKSEEASSQKKTKGRGRHASKITEEEEDEEYLKEEEGGLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGSPDERKHIREDLLVAGKFDVVVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYITGDHLVTSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKLVSDNWVEPSRRERKRNYSESEYFKQTMRQSAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEGGEPLTAEESEEKEQLLEQGFSSWSRKDFNTFIRACEKYGRNDITSIASEMEGKTEEEVEIYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKGAFRTSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSSTPSKRVLPRQAESPSLKKRKQLTMDYYVNSGKKKK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01236 1062 Coils Coil 13 43 - -
Vivi1g01236 1062 CDD SANT 841 891 IPR001005 -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 14 38 - -
Vivi1g01236 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 739 837 - -
Vivi1g01236 1062 Gene3D - 926 1030 - -
Vivi1g01236 1062 Gene3D ISWI, HAND domain 739 837 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vivi1g01236 1062 SMART sant 838 887 IPR001005 -
Vivi1g01236 1062 SMART sant 940 1001 IPR001005 -
Vivi1g01236 1062 Pfam HAND 751 833 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vivi1g01236 1062 Gene3D iswi atpase 893 925 - -
Vivi1g01236 1062 Pfam SLIDE 895 1005 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vivi1g01236 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 838 892 - -
Vivi1g01236 1062 FunFam Chromatin-remodeling complex ATPase 188 403 - -
Vivi1g01236 1062 Pfam SNF2-related domain 200 467 IPR000330 GO:0005524|GO:0140658
Vivi1g01236 1062 Gene3D - 838 892 - -
Vivi1g01236 1062 Coils Coil 78 105 - -
Vivi1g01236 1062 Gene3D - 408 700 IPR027417 -
Vivi1g01236 1062 Coils Coil 988 1022 - -
Vivi1g01236 1062 ProSiteProfiles SANT domain profile. 837 889 IPR017884 -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 134 167 - -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 49 71 - -
Vivi1g01236 1062 Gene3D - 188 403 IPR038718 -
Vivi1g01236 1062 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 750 840 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vivi1g01236 1062 CDD SF2_C_SNF 488 613 - -
Vivi1g01236 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 408 700 - -
Vivi1g01236 1062 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 90 1047 - -
Vivi1g01236 1062 CDD DEXHc_SMARCA1_SMARCA5 184 404 IPR044754 GO:0005524
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 1 81 - -
Vivi1g01236 1062 SUPERFAMILY Homeodomain-like 893 1015 IPR009057 -
Vivi1g01236 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 684 IPR027417 -
Vivi1g01236 1062 SUPERFAMILY Homeodomain-like 841 891 IPR009057 -
Vivi1g01236 1062 SMART ultradead3 183 375 IPR014001 -
Vivi1g01236 1062 Pfam Helicase conserved C-terminal domain 492 602 IPR001650 -
Vivi1g01236 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 402 IPR027417 -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 1009 1026 - -
Vivi1g01236 1062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 643 IPR001650 -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 805 835 - -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 136 158 - -
Vivi1g01236 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 364 IPR014001 -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 746 771 - -
Vivi1g01236 1062 MobiDBLite consensus disorder prediction 1009 1046 - -
Vivi1g01236 1062 SMART helicmild6 518 602 IPR001650 -
Vivi1g01236 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 926 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01236 Vivi-Chr1 26133194 26142046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01236 208 629 RAD5 or RAD16-like Gene Family AT1G02670 27.327 6.98e-43 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g01236 SNF2_N 4.2e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01236 K11654 - gmx:100791510 1860.11