Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01211 ATGTCAACCTCCAAAAAACCAACATCAGATTCATCTTTCAAACCCTATCATGAAACAAATCAAACACAAATGTGCTTATCACTCCTTCAAAGAAACACCAACACATTACCTAGTGGTGAAAAAAGAGGTAGAAGAAAACAAACCGAACCAGGAAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCTACAACCAAAGAAAGACACTGGCTTGGAACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCCATCTCCATGAAAGGAAACCAAGCTAGAACAAATTTCATTTACACTGATACCATAAACTTTCACACTCTTGTTTCTTCTCCTATTGATGTTCAAACCCTCTTACCAGCTTCACAGTTACTCACCAACACTACTCAAACCAATCAAAACACTACTCTTTCTCACCTCAACAACACTTCACTCACCACTGGCAAAGACCAAAACATGATCATGAGTACTTTTGATCATGAAAAAACAAATCATGATGATAATTTCTTCTTTTCCAATGACACTAACTCTGGCTACCTTGAATGCATAGTTCCTGATAACTGTTTCAGAAACAGCAATGTTAGTAATAGTACTACTTCAAGTGATGAAAAAGTTGGTGATATCAACAACAAAGTTTCCATGGAGGGTCAAATTCAATCACATTTTGGCATCCCTTCATTTTCTCAAGAAATGCCAACAAGGGTCACTGGTTTTTCTGAGTTTTCTTATTGTCCAAGTGAAGGGTTCTTAGATTGGAACTCTAATGAACTTTCAGCTATATTCAACAACAATGTTCCACTAACAGTTCATGAAAATCAATGCATGGATATGGATACATTAATGTTTCCAAATTATCCCATCATTGAAAACCTAACTCCAAGCTATGGATTACTCAATGATCAAGCTTCTTCTTCAACAAACTATTCTCCATCACTTGATTTTGGTTACCCTCTCTTTTAA 993 0.3706 MSTSKKPTSDSSFKPYHETNQTQMCLSLLQRNTNTLPSGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYTDTINFHTLVSSPIDVQTLLPASQLLTNTTQTNQNTTLSHLNNTSLTTGKDQNMIMSTFDHEKTNHDDNFFFSNDTNSGYLECIVPDNCFRNSNVSNSTTSSDEKVGDINNKVSMEGQIQSHFGIPSFSQEMPTRVTGFSEFSYCPSEGFLDWNSNELSAIFNNNVPLTVHENQCMDMDTLMFPNYPIIENLTPSYGLLNDQASSSTNYSPSLDFGYPLF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01211 330 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vivi1g01211 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 203 - -
Vivi1g01211 330 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vivi1g01211 330 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vivi1g01211 330 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vivi1g01211 330 FunFam Ethylene-responsive transcription factor 2 52 110 - -
Vivi1g01211 330 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vivi1g01211 330 Pfam AP2 domain 55 101 IPR001471 GO:0003700|GO:0006355
Vivi1g01211 330 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Vivi1g01211 330 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01211 Vivi-Chr1 25451306 25452323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01211 1 201 AP2-EREBP Transcription Factor Family AT5G18560 46.586 7.49e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g01211 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01211 - - cam:101500468 383.259