Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g01210 | ATGGAACGGTACGGCCGAGTGAATGAAGGGTCGCAATCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGTGAGGCCACGAATGAAGGGTATGGATTGGTGGGTGTTGAATCGTATCCTCTGCGGCCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTTGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCAGGGGAGTATCCGGAACGAGTTGGACAGCCAGTGTGCCAGTATTATGTAAGGACCGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAGACAAACAGCAGGAGCTACTGCCCCCGTGTCGCTAAATCATTATGGATATCCTTTGCGAGTGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTAACTTGTAAATTCCATCATCCACAGGCCACCGGTGTCCAAACCGGTGTCCAATTGCTAGCACCATCACCAGCTCCCCAAGTTACACCTCTGTCTATGCCAGTTCAGGCACCAATTTATCAAACTGTACAGCCTCCACCCGGTCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTCTGCTGCATGGCTCGTTTGTCCAGGGTCCCTACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGTTGGAGCCCTTATCATCAGGCTCCAGCAGCAAGTCCTGTACTTCCTTCGAGTGCTCCGTTGAGTGTTGTTCCACCACAGATTTATGGGATAACTCAGCTACCTTCACCGACAACTGTCTTTACTGGACAGTATCAGCCTTCTGGTTCCTCAGCTGGTCCTTCAGGCAGTAGTCAGACTCAGAAGGAACACTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACGGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCATCATCCGCGGGACACAGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATAGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTAGCTGATATGCCGGTTGCACCCTATCCCGTTGGTTCCTCCATTGGCACCCTTGCTCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCCTTAGGATCCAGCATAGAGTCCGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTGCATTAGCTGGATTGACTTTATCGACTGTTCTACCGGTTTCTCTATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTTCCTCACACCTCAAGCTAA | 1455 | 0.501 | MERYGRVNEGSQSDPTPEWTVAAGEATNEGYGLVGVESYPLRPDEADCIYYLRTGFCGYGLRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYVRTGSCKFGASCKYHHPRQTAGATAPVSLNHYGYPLRVGEKECSYYVKTGQCKFGVTCKFHHPQATGVQTGVQLLAPSPAPQVTPLSMPVQAPIYQTVQPPPGPSQQQYSVLVARPPLLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAPAASPVLPSSAPLSVVPPQIYGITQLPSPTTVFTGQYQPSGSSAGPSGSSQTQKEHSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPIGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELALGSSIESASSRMSSSMSTSTALAGLTLSTVLPVSLSSSQPSAQSSSSLATPSATTSSTVPHTSS | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g01210 | 484 | PANTHER | PROTEIN PHOSPHATASE RELATED | 32 | 412 | - | - | |
Vivi1g01210 | 484 | MobiDBLite | consensus disorder prediction | 277 | 300 | - | - | |
Vivi1g01210 | 484 | SUPERFAMILY | CCCH zinc finger | 308 | 334 | IPR036855 | GO:0046872 | |
Vivi1g01210 | 484 | SUPERFAMILY | CCCH zinc finger | 353 | 380 | IPR036855 | GO:0046872 | |
Vivi1g01210 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 42 | 70 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SUPERFAMILY | CCCH zinc finger | 45 | 70 | IPR036855 | GO:0046872 | |
Vivi1g01210 | 484 | SUPERFAMILY | CCCH zinc finger | 134 | 160 | IPR036855 | GO:0046872 | |
Vivi1g01210 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 306 | 334 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | MobiDBLite | consensus disorder prediction | 277 | 308 | - | - | |
Vivi1g01210 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 350 | 378 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 87 | 115 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Gene3D | - | 42 | 121 | - | - | |
Vivi1g01210 | 484 | MobiDBLite | consensus disorder prediction | 456 | 484 | - | - | |
Vivi1g01210 | 484 | FunFam | Zinc finger nuclease 2 | 41 | 118 | - | - | |
Vivi1g01210 | 484 | SUPERFAMILY | CCCH zinc finger | 90 | 115 | IPR036855 | GO:0046872 | |
Vivi1g01210 | 484 | Gene3D | - | 294 | 378 | - | - | |
Vivi1g01210 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SMART | c3hfinal6 | 306 | 333 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SMART | c3hfinal6 | 350 | 377 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SMART | c3hfinal6 | 42 | 69 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | SMART | c3hfinal6 | 87 | 114 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Gene3D | - | 122 | 167 | - | - | |
Vivi1g01210 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 354 | 376 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 44 | 69 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 309 | 333 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 160 | IPR000571 | GO:0046872 | |
Vivi1g01210 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 90 | 114 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g01210 | Vivi-Chr1 | 25422774 | 25427150 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g01210 | 1 | 446 | C2H2 Transcription Factor Family | AT5G18550 | 52.484 | 9.86e-137 | 400 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vivi1g01210 | zf-CCCH | 3.3e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g01210 | - | - | mtr:11409008 | 653.284 |