Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01210 ATGGAACGGTACGGCCGAGTGAATGAAGGGTCGCAATCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGTGAGGCCACGAATGAAGGGTATGGATTGGTGGGTGTTGAATCGTATCCTCTGCGGCCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTTGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCAGGGGAGTATCCGGAACGAGTTGGACAGCCAGTGTGCCAGTATTATGTAAGGACCGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAGACAAACAGCAGGAGCTACTGCCCCCGTGTCGCTAAATCATTATGGATATCCTTTGCGAGTGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTAACTTGTAAATTCCATCATCCACAGGCCACCGGTGTCCAAACCGGTGTCCAATTGCTAGCACCATCACCAGCTCCCCAAGTTACACCTCTGTCTATGCCAGTTCAGGCACCAATTTATCAAACTGTACAGCCTCCACCCGGTCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTCTGCTGCATGGCTCGTTTGTCCAGGGTCCCTACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGTTGGAGCCCTTATCATCAGGCTCCAGCAGCAAGTCCTGTACTTCCTTCGAGTGCTCCGTTGAGTGTTGTTCCACCACAGATTTATGGGATAACTCAGCTACCTTCACCGACAACTGTCTTTACTGGACAGTATCAGCCTTCTGGTTCCTCAGCTGGTCCTTCAGGCAGTAGTCAGACTCAGAAGGAACACTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACGGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCATCATCCGCGGGACACAGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATAGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTAGCTGATATGCCGGTTGCACCCTATCCCGTTGGTTCCTCCATTGGCACCCTTGCTCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCCTTAGGATCCAGCATAGAGTCCGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTGCATTAGCTGGATTGACTTTATCGACTGTTCTACCGGTTTCTCTATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTTCCTCACACCTCAAGCTAA 1455 0.501 MERYGRVNEGSQSDPTPEWTVAAGEATNEGYGLVGVESYPLRPDEADCIYYLRTGFCGYGLRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYVRTGSCKFGASCKYHHPRQTAGATAPVSLNHYGYPLRVGEKECSYYVKTGQCKFGVTCKFHHPQATGVQTGVQLLAPSPAPQVTPLSMPVQAPIYQTVQPPPGPSQQQYSVLVARPPLLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAPAASPVLPSSAPLSVVPPQIYGITQLPSPTTVFTGQYQPSGSSAGPSGSSQTQKEHSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPIGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELALGSSIESASSRMSSSMSTSTALAGLTLSTVLPVSLSSSQPSAQSSSSLATPSATTSSTVPHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01210 484 PANTHER PROTEIN PHOSPHATASE RELATED 32 412 - -
Vivi1g01210 484 MobiDBLite consensus disorder prediction 277 300 - -
Vivi1g01210 484 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Vivi1g01210 484 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
Vivi1g01210 484 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Vivi1g01210 484 SUPERFAMILY CCCH zinc finger 45 70 IPR036855 GO:0046872
Vivi1g01210 484 SUPERFAMILY CCCH zinc finger 134 160 IPR036855 GO:0046872
Vivi1g01210 484 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872
Vivi1g01210 484 MobiDBLite consensus disorder prediction 277 308 - -
Vivi1g01210 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vivi1g01210 484 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Vivi1g01210 484 Gene3D - 42 121 - -
Vivi1g01210 484 MobiDBLite consensus disorder prediction 456 484 - -
Vivi1g01210 484 FunFam Zinc finger nuclease 2 41 118 - -
Vivi1g01210 484 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Vivi1g01210 484 Gene3D - 294 378 - -
Vivi1g01210 484 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vivi1g01210 484 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Vivi1g01210 484 SMART c3hfinal6 306 333 IPR000571 GO:0046872
Vivi1g01210 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vivi1g01210 484 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Vivi1g01210 484 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Vivi1g01210 484 Gene3D - 122 167 - -
Vivi1g01210 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 376 IPR000571 GO:0046872
Vivi1g01210 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Vivi1g01210 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 333 IPR000571 GO:0046872
Vivi1g01210 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Vivi1g01210 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01210 Vivi-Chr1 25422774 25427150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01210 1 446 C2H2 Transcription Factor Family AT5G18550 52.484 9.86e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01210 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01210 - - mtr:11409008 653.284