Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01199 ATGGTGGACAACAACATCAACATTGGAGGAAGTTCTTTTGATAACGAAAACAGTGGCATTAAGGAACAAGATCGGTTGTTACCAATAGCAAATGTAGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAAGAAACAATGCAAGAGTGTGTTTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGCAGGAAGGAAAGAAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTAGCTACACTTGGCTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTTGATAGAACACCAAATGCTAATAATATTGTTCAAGATAGAGGAAATTAA 390 0.3641 MVDNNINIGGSSFDNENSGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDRTPNANNIVQDRGN 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01199 129 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Vivi1g01199 129 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Vivi1g01199 129 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Vivi1g01199 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Vivi1g01199 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi1g01199 129 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi1g01199 129 Gene3D Histone, subunit A 13 128 IPR009072 GO:0046982
Vivi1g01199 129 FunFam Nuclear transcription factor Y subunit B-3 15 129 - -
Vivi1g01199 129 SUPERFAMILY Histone-fold 23 121 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01199 Vivi-Chr1 25184626 25185283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01199 20 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.000 3.87e-57 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g01199 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01199 K08065 - mtr:11422870 206.838