Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01197 ATGTTTCTCTATCCCCGCCTCAGAGCTCTTCTCCATTCCCAAACCCCAAAATGCTACCTTCTCCACTCTCTCAATTCCTTCTCCACAACCTCAGATTCAACTCCACAATCCTTCACCATATCCTACCTCACCAACACTTGCGGTTTATCTCCACAAGACGCTCTCAAAGCATCAAAACGCATCCATTTCACCACCCCCGAAAAACCCGATTCCGTCATCACCTTCTTCAAAACTCACGGTTTCTCCATTCCCCACATTCAAACCATCATCCTCAAGGATCCTGAGCTTCTAGTCTCAAACCCCATCAAATCCCTTTTGCCAAAGTTCCAATTTTTATCCTCCAAAGGCGTTTCCCCCTCTGACATAGTCGCTACCGTCATCAGAAGCCCTCGTTTCCTTCGTGTAAGCCTTGAGAAACACATTATCCCTGCTTTTGAATTGGTAAGAAGCTTCTGTCCCTCTGATCAGAAAGCTATTGATTCAATCATTGTTTGTCCCACTTCAATCAGTGACGGTCGCATGAAACCAAATGTTCAATTTTTAATTGATTTTGGGGTAACCCCTTCTTGTATTTACCATTTCCTTAGGACTAGACCTTCTATTATATGTTCTAATGATTTGAGAAAAGCTGTGGAAGAAATTAAGGAATTAGGGTTTGACCCTGCTAAAGTCAGTTTTGGTGTGGCATTATTGGCCAAAAGGGCTATCACTAAATCCCAATGGGATGCCAAAGTTGATGTCTTGAAGAAATGGGGTTGCTCTGAAGATGCAATTTTTAGTGCATTTAAGAGGCAACCCAACTTTATGCTTAGGTCGCCGGAGAAACTCAATGCGGTTATGAGTTTGTGGGTCGAGGAGTTCGGTTGGAATCCTTCTATGCTGTTGGCTGCACCGACGCTTTTTGGTTATAGTATAGAGAAAAGGCTTACTCCACGGGCTTTGATTGTTAAGTATCTTCTATCCAAAGGTTTGATAAATGAGGGTGCTTGTTTAGCTACACCATTTAATATGACTGATGAGCATTTCCAGCGAAGGTATGTGAAACGTTTTAAGGAAACATCTATGCTGTTAAAGATAAATTAG 1083 0.4229 MFLYPRLRALLHSQTPKCYLLHSLNSFSTTSDSTPQSFTISYLTNTCGLSPQDALKASKRIHFTTPEKPDSVITFFKTHGFSIPHIQTIILKDPELLVSNPIKSLLPKFQFLSSKGVSPSDIVATVIRSPRFLRVSLEKHIIPAFELVRSFCPSDQKAIDSIIVCPTSISDGRMKPNVQFLIDFGVTPSCIYHFLRTRPSIICSNDLRKAVEEIKELGFDPAKVSFGVALLAKRAITKSQWDAKVDVLKKWGCSEDAIFSAFKRQPNFMLRSPEKLNAVMSLWVEEFGWNPSMLLAAPTLFGYSIEKRLTPRALIVKYLLSKGLINEGACLATPFNMTDEHFQRRYVKRFKETSMLLKIN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01197 360 FunFam Mitochondrial transcription termination factor-like 137 354 - -
Vivi1g01197 360 Gene3D Transcription termination factor 3, mitochondrial 47 168 IPR038538 -
Vivi1g01197 360 Gene3D Transcription termination factor 3, mitochondrial 169 353 IPR038538 -
Vivi1g01197 360 PANTHER CGI-12 PROTEIN-RELATED 36 349 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 192 220 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 159 187 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 Pfam mTERF 240 343 IPR003690 GO:0003690|GO:0006355
Vivi1g01197 360 Pfam mTERF 74 224 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01197 Vivi-Chr1 25152680 25154941 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01197 mTERF 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01197 K15031 - gmx:102667698 318.161