Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01192 ATGTTGCATCTCAGAGGTTTTCCTTACCCCAACAATCTTTCTTCAACCCCAAAATGTCATCTTCTTCTCCTCAAACCCCACTCTTTCACCTTTTTCTCCATTGCCGCCGCCGCCGCCACCACTACTTCAGATTCAGATAAAAAATCTTTCACCATATCCTACCTCACTAACAATTTTGGTTTATCTCCGCAAGATGCTCTCAAAGTATCCAAACGATTTACTTTCGAAACCCCCGAAAAACCCAATTCCGTCATCACCTTCTTCAAAACCCAAGGCTTCTCCGATCACCAGATACAATCCATTATTCGCAGGAATCATCAGCTCATCCTTTCCAACCCCATCAAAACCATTCTCCCTAAGCTTCAATTTTTAGCTTCCAAAGGCGCTTCTCCCACCGACATAGTCGCCACCGTCACCAGAAGCCCCTATTTCCTAACATCAAGTAGCCTCAAACGCATTATTCAAACTTTTGAATTGGTAAGAACTTTCTGTCCGTCTAATAAAAAAGCTATTGCTATAATCATTGTCTGTCCAACTTTATTTCGTGATCTCCGAATGAAACCAAATCTTCAATTTTTACTCGTTTCCGGTGTCAATCGTTCAGGCATTTACTTTTTGCTTCGTTCTAGACCTTTTGTATTTTGTTATACTGATATGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCAAAATTCAAATTTTGTGTGGCGTTACTTGCCAAGAGGACTGTCGCTAAATCACAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATGTCATTTTTTATGCCTTTAAAATACAGCCTAACTTTATGCTACGGTCACCGGATAAACTCAATGCGGTGATGCAATTTTGGGTCAAAGAGCTTGAATGGGATCCTTCAGTGCTCTTTGCAGCACCTGACCTATTCGGATGTAGTCTAGAGAAAAGGCTTGTTCCAAGGGCTTCAGTCGTCCGGTATCTTTTATCCAAAGGTTTGATGAAGAAGAGTGCTAGCTTGCGTACACCGTTTAGTTTGACTGAAGAGTTGTTCATGGAAAAGTATGTGGATTGTTATGAAGAAGAAGAAGCGTCTAAGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCATATAG 1146 0.4136 MLHLRGFPYPNNLSSTPKCHLLLLKPHSFTFFSIAAAAATTTSDSDKKSFTISYLTNNFGLSPQDALKVSKRFTFETPEKPNSVITFFKTQGFSDHQIQSIIRRNHQLILSNPIKTILPKLQFLASKGASPTDIVATVTRSPYFLTSSSLKRIIQTFELVRTFCPSNKKAIAIIIVCPTLFRDLRMKPNLQFLLVSGVNRSGIYFLLRSRPFVFCYTDMRKAVEEIKELGFDPSKFKFCVALLAKRTVAKSQWDAKVDALKSWGCSEDVIFYAFKIQPNFMLRSPDKLNAVMQFWVKELEWDPSVLFAAPDLFGCSLEKRLVPRASVVRYLLSKGLMKKSASLRTPFSLTEELFMEKYVDCYEEEEASKLLRLYQGKDASI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01192 381 Gene3D Transcription termination factor 3, mitochondrial 64 183 IPR038538 -
Vivi1g01192 381 Gene3D Transcription termination factor 3, mitochondrial 184 367 IPR038538 -
Vivi1g01192 381 PANTHER CGI-12 PROTEIN-RELATED 47 365 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 Pfam mTERF 185 354 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 Pfam mTERF 86 232 IPR003690 GO:0003690|GO:0006355
Vivi1g01192 381 FunFam Mitochondrial transcription termination factor-like 149 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01192 Vivi-Chr1 25051247 25052916 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01192 mTERF 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01192 K15031 - gmx:102666739 312.383