Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01190 ATGTTGCATCTAAGAGGTTTTCCTTACCCCAACAATCTTTCTTCAACCCCAAAATGTCATCTTCTTCTCCTCAAACCCCACTCTTTCACCGCCGCCGCCGCCACAACCACTGCAGATTCAGATAAAAAATCTTTCACCATATCTTACCTCACTAACAATTGTGGTTTATCTCCACAAGATGCTCTCAAAGTATCCAAACGATTTACTTTCGAAACCCCCGAAAAACCCAATTCCGTCATCACCTTCTTCAAAACCCAAGGCTTCTCCGATGACCAGATACAATCCATTATTCGCAGGAATCCTCAGCTCATCCTTTCCAACCCCATCAAAACCATTCTCCCTAAGCTTCAATTTTTAGCTTCCAAAGGCGCTTCTCCCACCGACATAGTCGCCACCGTCACCGGAAGCCCCTATTTCCTAACATCAAGTAGCCTCAAACGCATTATTCAAACTTTTGAATTGGTAAGAACTTTCTGTCCCTCTGATCAAAAAGCTATTACTTCAATCATTGCCTATCCATCTTTCGTTTGTGATATGCGAGTGAAACCAAATCTTCAATTTTTACTCGTTTCCGGTGTCAATCGTTCAGGCATTTATCATTTGCTTCGTTCTAGACCTTCTGTAATTTGTTCTACTGATTTGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTTAAAGTACAATTTTTGTGTGGCGTTACTTGCCAAGAGGGGTATCTCTAAATCACTATGGGATACTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATGTGATTCTTGATGCCTTTAAAAGACAGCCTTACTTTATGCTACGGTCATCGGATAAACTCAATGCGGTGATGCAATTTTGGGTCAAAGAGCTTGAATGGGATCCTTCCGTGCTCATGGCAGCACCTGAACTATTCGGACTTAGTCTAGAGAAAAGGCTTGTTCCAAGGGCTTCAGTCGTCCGGTATCTGTTATCCAAAGGTTTGATTAAGAAGAGTGCTAGATTGTATACACCGTTTAAAATCTCTGATGTGTTGTTCATGAAAAAGTATGTGGATTGTTATGAAGAAGAAGAAGCGTCTAAGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCATATAG 1131 0.4156 MLHLRGFPYPNNLSSTPKCHLLLLKPHSFTAAAATTTADSDKKSFTISYLTNNCGLSPQDALKVSKRFTFETPEKPNSVITFFKTQGFSDDQIQSIIRRNPQLILSNPIKTILPKLQFLASKGASPTDIVATVTGSPYFLTSSSLKRIIQTFELVRTFCPSDQKAITSIIAYPSFVCDMRVKPNLQFLLVSGVNRSGIYHLLRSRPSVICSTDLRKAVEEIKELGFHPLKYNFCVALLAKRGISKSLWDTKVDALKSWGCSEDVILDAFKRQPYFMLRSSDKLNAVMQFWVKELEWDPSVLMAAPELFGLSLEKRLVPRASVVRYLLSKGLIKKSARLYTPFKISDVLFMKKYVDCYEEEEASKLLRLYQGKDASI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01190 376 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 FunFam Mitochondrial transcription termination factor-like 144 361 - -
Vivi1g01190 376 Pfam mTERF 249 346 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 Pfam mTERF 81 227 IPR003690 GO:0003690|GO:0006355
Vivi1g01190 376 Gene3D Transcription termination factor 3, mitochondrial 59 176 IPR038538 -
Vivi1g01190 376 Gene3D Transcription termination factor 3, mitochondrial 177 362 IPR038538 -
Vivi1g01190 376 PANTHER CGI-12 PROTEIN-RELATED 42 360 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01190 Vivi-Chr1 25037670 25039056 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01190 mTERF 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01190 K15031 - gmx:102666739 320.087