Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01188 ATGTTGCATCTCAGAGGTTTTCCTTACCCCAACAATCTTTCTTCAACCCCAAAATGTCATCTTCTTCTCCTCAAACCCCACTCTTTCACCTTTTTCTCCATTGCCGCCGCCGCCACAACCACTGCAGATTCAGATAAAAAATCTTTCACCATATCTTACCTCACTAACAATTGTGGCTTATCTCCACAAGATGCTCTCAAAGTATCCAAACGATTTACTTTCGAAACCCCCGAAAAACCCAATTCCGTCATCACCTTCTTCAAAACCCAAGGCTTCTCCGATGACCAGATACAATCCATTATTCGCAGGAGTCCTAAGCTCATCCTTTCCAACCCCATCAAAACCATTCTCCCTAAGCTTCAATTTTTAGCTTCCAAAGGCGCTTCTCCCACCGACATAGTCGCCACCATCACCAGAAGCCCCCAATTCCTAACATCAAGCCTGAAACGCATTATTCAAACTTTTGAATTGGTAAGAACTTTCTGTCCGTCTGATCAAAAAGCTATTGCTCTAATCATTGTCTGTCCATCTTTAGTTCGTGATATCCTATTGAAACCAAATCTTCAATTTTTACTCGATTCCGGTGTCACTCCTTCCGGCATTTACCGTTCGCTTCGTTCTAGACCTTCTGTATTTTGTTCTACTGGTGTGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCAAAATTCAAATTTTGTGTGGCGTTACTTGCCAAGAGGACTGTCGCTAAATCACAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTTTTCTGAAGATGTGATTCTTGATGCCTTTAAAAGACAGCCTAACTTTATGCTACGGTCACCGGATAAACTCAATGCGGTGATGCAATTTTGGGTCAAAGAGCTTGAATGGGATCCTTCAGTGCTATTTGCAGCACCTGACCTATTCGGATGTAGTCTGGAGAAAAGGCTTGTTCCAAGGGCTTCAGTCGTCCGGTATCTTTTATCCAAAGGTTTGATTAAGAAGAGTGCTAGCTTGTATACACCGTTTAAATACCCTGATGTGTTATTCATGGAAAAGTATGTGGATTGTTATGAAGAAGAAGAAGCGTCTAAGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCATATAG 1140 0.4219 MLHLRGFPYPNNLSSTPKCHLLLLKPHSFTFFSIAAAATTTADSDKKSFTISYLTNNCGLSPQDALKVSKRFTFETPEKPNSVITFFKTQGFSDDQIQSIIRRSPKLILSNPIKTILPKLQFLASKGASPTDIVATITRSPQFLTSSLKRIIQTFELVRTFCPSDQKAIALIIVCPSLVRDILLKPNLQFLLDSGVTPSGIYRSLRSRPSVFCSTGVRKAVEEIKELGFDPSKFKFCVALLAKRTVAKSQWDAKVDALKSWGFSEDVILDAFKRQPNFMLRSPDKLNAVMQFWVKELEWDPSVLFAAPDLFGCSLEKRLVPRASVVRYLLSKGLIKKSASLYTPFKYPDVLFMEKYVDCYEEEEASKLLRLYQGKDASI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01188 379 PANTHER CGI-12 PROTEIN-RELATED 46 363 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 Gene3D Transcription termination factor 3, mitochondrial 46 181 IPR038538 -
Vivi1g01188 379 Gene3D Transcription termination factor 3, mitochondrial 182 365 IPR038538 -
Vivi1g01188 379 Pfam mTERF 85 279 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 Pfam mTERF 186 345 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 FunFam Mitochondrial transcription termination factor-like 147 364 - -
Vivi1g01188 379 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vivi1g01188 379 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01188 Vivi-Chr1 24943543 24944682 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01188 mTERF 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01188 K15031 - gmx:102666739 325.479