Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01187 ATGTTGCATCTAAGAGGTTTTCCTTACCCCAACAATCTTTCTTCAACCCCAAAATGTCATCTTCTTCTCCTCAAACCCCACTCTTTCACCGCCGCCGCCGCCACAACCACTGCAGATTCAGATAAAAAATCTTTCACCATATCTTACCTCACTAACAATTGTGGTTTATCTCCACAAGATGCTCTCAAAGTATCCAAACGATTTACTTTCGAAACCCCCGAAAAACCCAATTCCGTCATCACCTTCTTCAAAACCCAAGGCTTCTCCGATGACCAGATACAATCCATTATTCGCAGGAATCCTCAGCTCATCCTTTCCAACCCCATCAAAACCATTCTCCCTAAGCTTCAATTTTTAGCTTCCAAAGGCGCTTCTCCCACCGACATAGTCGCCACCGTCACCGGAAGCCCCTATTTCCTAACATCAAGCCTCAAACGCATTATTCAAACTTTTGAATTGGTAAGAAGTTTCTGTCCGTCTGATCAAAAAGCTATTGCTATAATCATTGTCTGTCCAACTTTATTCCGAACGAAACCAAATCTTCAATTTTTACTCGTTTCCGGTGTCAATCGTTCAGGCATTTACTTTTTGCTTCGTTCTAGACCTTCTGTATTTTGTTCTACTGATGTGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCAAAATTCAAATTTTGTGTGGCGTTACTTGCCAAGAGGACTGTCGCTAAATCACAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATGTCATTTTTGATGCCTTTAAAATACAGCCTAACTTTATGCTACGGTCACCAGATAAACTCAATGCGGTGATGCAATTTTGGGTCAAAGAGCTTGAATGGGATCCTTCAGTGCTCTTTGCAGCACCTGACCTATTCGGATGTAGTCTAGAGAAAAGGCTTGTTCCAAGGGCTTCAGTCGTCCGGTATCTTTTATCCAAAGGTTTGATGAAGAAGAGTGCTAGCTTGCGTACACCGTTTAGTTTGACTGAAGAGTTGTTCATGGAAAAGTATGTGGATTGTTATGAAGAAGAAGAAGCGTCTAAGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCATATAG 1119 0.42 MLHLRGFPYPNNLSSTPKCHLLLLKPHSFTAAAATTTADSDKKSFTISYLTNNCGLSPQDALKVSKRFTFETPEKPNSVITFFKTQGFSDDQIQSIIRRNPQLILSNPIKTILPKLQFLASKGASPTDIVATVTGSPYFLTSSLKRIIQTFELVRSFCPSDQKAIAIIIVCPTLFRTKPNLQFLLVSGVNRSGIYFLLRSRPSVFCSTDVRKAVEEIKELGFDPSKFKFCVALLAKRTVAKSQWDAKVDALKSWGCSEDVIFDAFKIQPNFMLRSPDKLNAVMQFWVKELEWDPSVLFAAPDLFGCSLEKRLVPRASVVRYLLSKGLMKKSASLRTPFSLTEELFMEKYVDCYEEEEASKLLRLYQGKDASI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01187 372 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 FunFam Mitochondrial transcription termination factor-like 143 357 - -
Vivi1g01187 372 PANTHER CGI-12 PROTEIN-RELATED 42 356 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 Pfam mTERF 179 345 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 Pfam mTERF 81 223 IPR003690 GO:0003690|GO:0006355
Vivi1g01187 372 Gene3D Transcription termination factor 3, mitochondrial 170 358 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01187 Vivi-Chr1 24882731 24884538 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01187 mTERF 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01187 K15031 - gmx:102666739 320.087