Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01184 ATGTTTCTTCATCACCGTCTCAGAACTCTTCTCTACTCCCAAACCCCAAAATGTCACCTTCTTCAGAGATTCCACCACTCTTTCAATTCCTTCTCCACCGCCACTTCAGATTCATCTCAACAACCCTTCACAGTCTCCTACCTCACCAACAATCTCGGTTTATCTCCACAAGACGCTCTCAAAGCATCCAAACGACTCCGTTTCACAACCCCCGAAAAACCCAACTCCGTCCTCACCTTCTTCAAAACCCACGGTTTCTCCAATCACCAGATACAGTCCATCATCCTCAAAGCCCCAGCACTCTTATCATCCAACCCCACCAAAACCATTCTCCCAAAGTTCCAATTTTTAGCCTCCAAAGGCGCTTCCCCCTCTGACATAGCCGCCACCGTCACCAGAAGCCCCCATTTCCTTGGCTCAAGCCTGAAACGTATTATCCCTTCTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTACTTCAATCATTTTTTGTCCCTCTTCCATTTCTGATATCCGCATGAAACCAAATCTTCAATTTTTACTCGATTCCGGTGTCACTCCTTCCAGCATTTACCGTTTGCTTTGTTCTAGACCTTCTGTAATTTGTTCTACTGATTTGAGAAAGGCTGTGGACGAGATTAAGGAATTAGGGTTTGATCCTTCCAAATACAATTTTTGTGTGGCATTACTTGCTAAGAAGGCTATCTCTAAATCCCAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTCAAGATGTGATTTTTGATGCCTTTAAAAGACAGCCTAACTTTATGCTACGGTCGCCGGACAAGCTCAACGCGGTGATGCGGTTTTGGGTCGAGGAGCTTGGTTGGGATCCTTCATTGCTACTGGCAGCACCGGATCTTTTTGGATTTAGTATAAAGAAAAGGTTTATTCCGAGGGCTTCTGTTGTTAGGTATCTACTTTCCAATGGTTTGATGAAGAAGGATGCTAGCTTAGTAACGCCGTTTTATCCGTCCGATGAGTTGTTCCTGCAAAGGTATGTGAAACGGTTTGAGGATGAAGCATCTAGCCTATTAAAGCTATATCAAGGGTAG 1104 0.4411 MFLHHRLRTLLYSQTPKCHLLQRFHHSFNSFSTATSDSSQQPFTVSYLTNNLGLSPQDALKASKRLRFTTPEKPNSVLTFFKTHGFSNHQIQSIILKAPALLSSNPTKTILPKFQFLASKGASPSDIAATVTRSPHFLGSSLKRIIPSFELVRSFCPSDQKAITSIIFCPSSISDIRMKPNLQFLLDSGVTPSSIYRLLCSRPSVICSTDLRKAVDEIKELGFDPSKYNFCVALLAKKAISKSQWDAKVDALKSWGCSQDVIFDAFKRQPNFMLRSPDKLNAVMRFWVEELGWDPSLLLAAPDLFGFSIKKRFIPRASVVRYLLSNGLMKKDASLVTPFYPSDELFLQRYVKRFEDEASSLLKLYQG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01184 367 FunFam Mitochondrial transcription termination factor-like 141 358 - -
Vivi1g01184 367 Pfam mTERF 241 346 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 Pfam mTERF 78 224 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 PANTHER CGI-12 PROTEIN-RELATED 39 353 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 SMART mt_12 128 158 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 SMART mt_12 196 224 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Vivi1g01184 367 Gene3D Transcription termination factor 3, mitochondrial 170 363 IPR038538 -
Vivi1g01184 367 Gene3D Transcription termination factor 3, mitochondrial 51 169 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01184 Vivi-Chr1 24786189 24787633 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01184 mTERF 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01184 K15031 - gmx:102666739 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01184 1 24786189 24787633 Vivi1g01184 1 24786189 24787633 ECH