Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01183 ATGAGCAGAATCTTTGATCTCATGTTTCATCATCACCGTCTCAGACCTCTCCTCTATCCCCAAACCCCAATATGTCACCTTCTTCAAACAATCCACCACTCTTTCAATTCCTTCTCCACCGCCACCCCAGATTTATCTCAACAACCCTTCACAGTCTCCTACCTCACCAACAATCTCGGTTTATCTCCACAAGACGCTCTCAAAGCATCCAAACGCATCAATTTCACCACCCCCGAAAAACCCGATTCCGTCATCACCTTCTTCAAAACTCACGGTTTCTCCATTCCCCAAATCCAATCCATCATCCTCAAAGCCCCTGCACTCTTATCATCCAACCCCAAAACCATTCTCCCAAAGTTTCAATTTTTGGCTTCCAAAGGCGCTTCCCCCTCCGACATAGCCGCCACCGTCACCAGAAGCCCCCATTTCCTCAAGTCAAGCCTCAAACGCATTATCCGTTCTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTACTTCAATCATATTCTGTCCCTCTTCCATTTCTGATATCCGCATGAAACCAAATCTTCAATTTTTACTCGATTCCGGTGTCACTCCTTCCAGCATTTACCGTTTACTTAGTTCTAGACCTTCTGTAATTTGTTCTACCGATTTGAGAAAGGCTGTGGAGGAGATTAAGGGATTAGGGTTTCACCCTTCCAAATACAATTTCTGTTTGGCATTACTAGCCAAAAGGGCTGTCACTAAATCACAATGGGATGCCAAAATTGATGCATTCAAGTGTTGGGGTTTCTCTGAAGATGCAATTTTTGATGCATTTAAAAGGAACCCTAAGATTATGCTACTGTCTCCAGATAAACTCAACGCGGTCATGAGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTCACTGCTTCTGCGAGCACCGGATCTTTTCGGATTTAGTATAAAGAAAAGGTTTATTCCGAGGGCTTCCGTTGTTACGTATCTACTTTCCAATGGTTTGATGAAGAAGGGTGCTAGCATAATTACGCCATTTTATCTGTCTGATGAGTTGTTCCTGCAAAGGTATGTGAAATGTTTTGAGGATGAAGCGTCTAAGCTATTAAAGCTGTATCAAGGGTAG 1122 0.4305 MSRIFDLMFHHHRLRPLLYPQTPICHLLQTIHHSFNSFSTATPDLSQQPFTVSYLTNNLGLSPQDALKASKRINFTTPEKPDSVITFFKTHGFSIPQIQSIILKAPALLSSNPKTILPKFQFLASKGASPSDIAATVTRSPHFLKSSLKRIIRSFELVRSFCPSDQKAITSIIFCPSSISDIRMKPNLQFLLDSGVTPSSIYRLLSSRPSVICSTDLRKAVEEIKGLGFHPSKYNFCLALLAKRAVTKSQWDAKIDAFKCWGFSEDAIFDAFKRNPKIMLLSPDKLNAVMSFWIKQLGWDPSLLLRAPDLFGFSIKKRFIPRASVVTYLLSNGLMKKGASIITPFYLSDELFLQRYVKCFEDEASKLLKLYQG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01183 373 Gene3D Transcription termination factor 3, mitochondrial 177 370 IPR038538 -
Vivi1g01183 373 Gene3D Transcription termination factor 3, mitochondrial 62 176 IPR038538 -
Vivi1g01183 373 FunFam Mitochondrial transcription termination factor-like 147 364 - -
Vivi1g01183 373 PANTHER CGI-12 PROTEIN-RELATED 47 361 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 SMART mt_12 99 129 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 Pfam mTERF 86 229 IPR003690 GO:0003690|GO:0006355
Vivi1g01183 373 Pfam mTERF 250 352 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01183 Vivi-Chr1 24779353 24782571 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1g01183 mTERF 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01183 K15031 - gmx:102666739 327.791