Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01162 ATGAAACTGAGTTGCAATGGTTGTCGTACTCTTCACAAAGGTTGTAGTGACGACTGCATCATCAAGCCTTGCCTTGAGTGGATAAATTCCCCTGAATCTCAATGCAATGCCACCCTCTTCCTTGCCAAATTCTTTGGCCGAACTGGCTTGCTCAACCTCCTCGCCAATGCTTCCAAACAAAATGCCCCAGCTGTTTTTAGATCATTATTGTACGAGGCTTCAGGTAGATTGATAAATCCAACATATGGAGCACTTGGTTTATTTTGGGCAGGAGAATGGAGCCGATGTGAAGCTGCAGTTCAAGCTGTGCTGACTGGATCAGACATTAATGAAGTTGTAGTTGTTGATGGAAAGATATCATCAACTACACTCATGGCTGAAAATTACGCCATTCAAGTTCCAACAACCTATGATATACGCCACGTGGCAAAAGGCACCAACATGGGCATCAAAAATAAAACTCAATTCAAGAGAATCACACAAGTTTTCAAATCTAAGCCACCAGTTGGTTCTGTCGACTCAAAAACACTTTTGAAATCACTTTTTGAAAATACCAATGTGGAAACTATTGAGGCTTCATCGGTGAATCAGATTGAGCCGAATGAAGTCATTGAGACTCAGGTGAACTTAGAGCTCAGTCTCAACTTCGATAGCAAATCAAATCAAAGAAAAGAAATAGATTATTAA 687 0.4076 MKLSCNGCRTLHKGCSDDCIIKPCLEWINSPESQCNATLFLAKFFGRTGLLNLLANASKQNAPAVFRSLLYEASGRLINPTYGALGLFWAGEWSRCEAAVQAVLTGSDINEVVVVDGKISSTTLMAENYAIQVPTTYDIRHVAKGTNMGIKNKTQFKRITQVFKSKPPVGSVDSKTLLKSLFENTNVETIEASSVNQIEPNEVIETQVNLELSLNFDSKSNQRKEIDY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01162 228 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
Vivi1g01162 228 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vivi1g01162 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01162 Vivi-Chr1 24401252 24402781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01162 1 210 AS2 family AT1G68510 42.609 5.45e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g01162 LOB 6.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01162 - - mtr:25485496 306.605