Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01121 ATGGATTCAGGCATGGAAGACGGTAAAGAATCCGAAAACTACTACGCACACAGCGGCAAGATAATGGTATCCACCGTCATCATTCTCTTCCTCATTACCATCACACTCCTCTCTCTCCACCTCCTTATCCGATGGTACCTTCTCCGTTATCGCCACAGTCAACAACACCTTCGCCGTACCCACCACGCTCGACGCCATTCCTTTGTTTTCTACTTTGAACACGATGTTCCTGCCTCGCTGAGGCTCGATGTGTCTCGCGGCCTCGATCCATCTGTCATCTCGTCTCTCCCGGTGTTTAAATATTCGTCAGAGGCAGGGTCGGATCAGGCGGTGGATTGCGCGGTTTGTTTGTCGGAGTTTGAGGAAGGAGAAATAGGTCGGATTTTGCCGAAGTGTAATCATAGTTTTCATGTTGATTGTATTGACATGTGGTTTCATACTCATTCTACTTGTCCGCTTTGTAGAAAATCGGTGGAGCTTCTTCCGGTTCAACAAGCGGTTGATGTGTGTGAACCGGAACTGGTTTTGGGTTCGAGTTTTGGGGAAGAGTCCAACCGGTATGAACCGGAGCTTACTTCTACTTCGTGTTCTAATGAGAAGCAGTCTTCGTTAGTTGGCGTGACAGTTGAAGTTCCGGGAACGAGCGAGGGTGAGCCGTCGTCGTCGTCTTTTCGGTCGCCGATGAGTCGTGTGTTGTCGTTCACGAGAATTCTCAGCAGAGAGAGGAAATCGAGCGTTTCTGCTACGTCGGACTGTATAGTGGAGTTAGATGCAGAACGAGTTGGAAGAGGAGACTCATTGAGCCGGATATGA 813 0.4932 MDSGMEDGKESENYYAHSGKIMVSTVIILFLITITLLSLHLLIRWYLLRYRHSQQHLRRTHHARRHSFVFYFEHDVPASLRLDVSRGLDPSVISSLPVFKYSSEAGSDQAVDCAVCLSEFEEGEIGRILPKCNHSFHVDCIDMWFHTHSTCPLCRKSVELLPVQQAVDVCEPELVLGSSFGEESNRYEPELTSTSCSNEKQSSLVGVTVEVPGTSEGEPSSSSFRSPMSRVLSFTRILSRERKSSVSATSDCIVELDAERVGRGDSLSRI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01121 270 CDD RING-H2_EL5-like 112 155 - -
Vivi1g01121 270 SMART ring_2 113 154 IPR001841 -
Vivi1g01121 270 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Vivi1g01121 270 Pfam Ring finger domain 112 155 IPR001841 -
Vivi1g01121 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Vivi1g01121 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 165 - -
Vivi1g01121 270 FunFam RING-H2 finger protein ATL3 85 160 - -
Vivi1g01121 270 SUPERFAMILY RING/U-box 92 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01121 Vivi-Chr1 23649698 23650582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01121 15 269 Rapid Response to Elicitors AT3G16720 43.357 5.42e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01121 - - vvo:131602851 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01121 1 23649698 23650582 Vivi1g01121 1 23649698 23650582 ECH
Vivi1g01121 1 23649698 23650582 Vivi4g02730 4 130149814 130151149 PCT