Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01120 ATGGCAGCAGGAGCAATTGAAAACAAAAACCATGACCAAAAGAAGAAGTTCGCCGTTCTCGGCGTGTCTTCGATCTTGCTTATCGCAATGGTAGCCGCGGTGGCCGTAGGTGTTTCCAACGGCGGAGACGCGGCTGAGTTACTAGGAGGTGGTGACAACCAAATAGCAAAATCACAAAAGAATGTCAAAGTACTTTGTGATGCAGCTGAGTACAAGAAAACCTGCGAGAGCAGTATGTCAAAAGCTTCATCAGAAAACGCAGACATGAAGGAGTTGATCAAAGCAGCATTGAATGCAACAGCTGAGGAGTTTCTCAAGCTAATCAATAACTCGAAGCTTTACGACGAGTTAGCTACCAATGACATGACAAAACAAGCCACAGAGATTTGCAAGGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCCATCCACACATTGGACAAATTTGATTTAAGCAAGATGGATGAGTATGCTTATGATCTCAAGGTTTGGCTCGCAGGTACACTTTCTCATCAACAAACATGTTTAGATGGCTTCGAAAACACAACAACAGAAGCTGGACAAACCATGGCTAAGGTTCTTAACGCCTCGTTGGAGCTAAGTCACAATGCTTTGGATATCATCAACGGAGTTTCGAGTTTCATGAAAAGTGTTAACATGAGCTCTTTGTCAAATGCTCTCAATAGGAAGCTTTTGTCTGAAGATGAAGATGGTTTCCCAACATGGGTTAGTCAGAATCAGAGGAAACTTCTTACAGCTCCTGAGAGTATTAAGCCTAATGTTATTGTTGCTCAAGATGGTACTGGACAGTTCAAGACTTTGACTGAGGCTCTTCTACTTGTTCCTAACAAGAACAAAACTCCTTTTGTTATTCGTGTTAAAGCTGGTGTCTATAAGGAGTATGTTGGTTTGGAAAAACATAAGACTCATGTTATTATCATTGGTGATGGTCCCACAAAGACTAAATTCACTGGCAGCAAAAACTATGTTGATGGTGTTCAGACCTATTTCACTGCAACATTCAGTGTGAATGCTGCTCATTTCATGGCTATCAACGTCGGTTTCGAGAACACAGCAGGACCAGATAAGCATCAAGCCGTTGCCCTCCGTGTCACCGCGGATCAAGCAGTGTTCTACAACTGTCAAATGGACGGATTCCAAGACACTCTCTACCCACAATCCAAAAGACAATTCTACCGCGACTGCACGATCTCCGGAACAATCGACTTCGTCTTCGGTGACGCTGTCGCAGTTTTCCAAAACTGCAAGCTCATTGCCAGGATGCCTTCGGAAGATCAACAATGCATGGTAACAGCAGGAGGAAGAACCAAAATCGACAGTCCATCAGGCCTTGTTTTCCAAAGCTGCCACTTCACCGGCGAACCCGAACTTCTTACCTTGGACCCCAAGATAGCATTTTTGGGAAGACCATGGAGAAACTTCTCAAAGGTTGTCATCATGGATTCCGTTATTGATGGTCACTATAACCCAGAGGGTTTTATGCCATGGATGGGAAGTCTTTACAAGGATACTTGCACTTATTATGAATACAACAACAAGGGTCTTGGTGCTAACACTGAGCAAAGAGTGACATGGCCAGGAATTAAAGTCCTAACTGCACCTGAAGCTGCTGTTTTTTACCCCGGAAAGTTTTTTGAACTTGCAAACTCAACTCTGCGTGATGCTTGGATTGTTCACTCTGGAATTCCTTACTCAGTTGGACCACTTTCTATTCCCACTGCATAA 1752 0.4355 MAAGAIENKNHDQKKKFAVLGVSSILLIAMVAAVAVGVSNGGDAAELLGGGDNQIAKSQKNVKVLCDAAEYKKTCESSMSKASSENADMKELIKAALNATAEEFLKLINNSKLYDELATNDMTKQATEICKEVLGYAVDDVHQSIHTLDKFDLSKMDEYAYDLKVWLAGTLSHQQTCLDGFENTTTEAGQTMAKVLNASLELSHNALDIINGVSSFMKSVNMSSLSNALNRKLLSEDEDGFPTWVSQNQRKLLTAPESIKPNVIVAQDGTGQFKTLTEALLLVPNKNKTPFVIRVKAGVYKEYVGLEKHKTHVIIIGDGPTKTKFTGSKNYVDGVQTYFTATFSVNAAHFMAINVGFENTAGPDKHQAVALRVTADQAVFYNCQMDGFQDTLYPQSKRQFYRDCTISGTIDFVFGDAVAVFQNCKLIARMPSEDQQCMVTAGGRTKIDSPSGLVFQSCHFTGEPELLTLDPKIAFLGRPWRNFSKVVIMDSVIDGHYNPEGFMPWMGSLYKDTCTYYEYNNKGLGANTEQRVTWPGIKVLTAPEAAVFYPGKFFELANSTLRDAWIVHSGIPYSVGPLSIPTA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01120 583 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Vivi1g01120 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Vivi1g01120 583 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Vivi1g01120 583 Pfam Pectinesterase 262 553 IPR000070 GO:0030599|GO:0042545
Vivi1g01120 583 SUPERFAMILY Pectin lyase-like 259 554 IPR011050 -
Vivi1g01120 583 Gene3D - 259 578 IPR012334 -
Vivi1g01120 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 212 IPR035513 -
Vivi1g01120 583 Pfam Plant invertase/pectin methylesterase inhibitor 62 209 IPR006501 GO:0004857
Vivi1g01120 583 CDD PMEI-like_3 65 215 - -
Vivi1g01120 583 PANTHER PECTINESTERASE 26 566 - -
Vivi1g01120 583 NCBIfam pectinesterase inhibitor domain 56 212 IPR006501 GO:0004857
Vivi1g01120 583 SMART PMEI_2 57 209 IPR006501 GO:0004857
Vivi1g01120 583 FunFam Pectinesterase 4 259 577 - -
Vivi1g01120 583 FunFam Pectinesterase 58 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01120 Vivi-Chr1 23635438 23637567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01120 13 579 Carbohydrate Esterase AT3G05610 44.251 4.13e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01120 K01051 - gmx:100800194 805.438