Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01119 ATGCTTGAACAAGGAGTTCATGTAGTATCTGGGAACCCTGGTCGAGTCTGTGACACGATCAAAAGGAGAACATTGTGCACGGGGGCTATCAAGTTGTTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTACAGATACCTCCCACCTAGTCTTCAGGTTGTCTTGATTTCCGCTACTTTACCTCATGAAGTACTGGAGATGACAAATAAGTTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGTGCATTAAGCAATACTTTGTTGAGGTTGAGAGGGAGGAATGA 336 0.4167 MLEQGVHVVSGNPGRVCDTIKRRTLCTGAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPSLQVVLISATLPHEVLEMTNKFMTDPVRILVKRDELTLECIKQYFVEVEREE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01119 111 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 88 IPR014001 -
Vivi1g01119 111 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 110 - -
Vivi1g01119 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
Vivi1g01119 111 Gene3D - 1 99 IPR027417 -
Vivi1g01119 111 Pfam DEAD/DEAH box helicase 2 74 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01119 Vivi-Chr1 23610411 23612029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01119 2 111 Eukaryotic Initiation Factors Gene Family AT3G19760 83.636 5.49e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01119 K13025 - vvo:131602831 223.402