Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01102 ATGGTTAATTTCCCATCTTTTGTAAACGGATTGGCAAGAACTATGTCAATAAAAAAAGACAAGAATTTCCAAAAGGATGATGCAAGAAAAGCAGTGGAAGAATTGGCAAAAGAAGCAAGGAAGAATGAATTGTTATTGAGTTCTTCTGGAGTTGTTAAGTCCAACAAAGACAACAGTTTTGTTTCTGTTTTTACACATAGAGGCCAAAAAGGAGTCAACCAAGATCGTCTTATTGTTTGGGAGGAATTTGGTTGCCAACAAGACATGATGTTTTGTGGAGTTTTTGATGGGCATGGTCCTTGGGGACACTTTGTAGCTAAAAGGGTGAGGAAATTAGTTCCATCTCTTTTGCTATGCAATTGGCAACGAAACCTTGCTGCAACATCAATTGACTTAGGTTTTAAGGTTGAAGAAAACAAAAATGTTCATGGATTAAACTTATGGGAACAATCATATTTAAAGACTTTTGCTGCAGTTGACCAAGATCTAAAGCATCATCCTCGAATTGATTCTTTTCGAAGTGGCTCAACTGCCTTGACAATGATCAAACAGGGTGAAAACCTTATTATATCGAATGTGGGCGATTCAAGACTTGTGTTGGCGACCACTTCAGAAGATGGCACATTACTTGCACTTCAGCTAACCACTGACTTCAAACCAAATTTACCAAAGGAGGCAGAGAGGATAGAAGAATCGAAAGGACGTGTATTTTGTATGAAAGATGAACCAGGAGTGTACAGAGTTTGGATGCCAAATGGTAAAACACCAGGGTTAGCAATATCAAGAGCATTTGGTGACTATTGTATGAAAGAGTATGGTTTAATCTCTGTGCCAGAAGTGACACATAGAAAACTTACCACTAGGGATCAATTTATCATCTTAGCAACTGATGGGGTTTGGGATGTTGTATCAAACCAAGAGGCAGTGAATATTGTTTGTGCATCGGCAGATAAAGAAAAAGCAAGTGAAAGGGTTGTGAAATATGCAATACGTGAATGGAAAAGAAAGAGAAGTGGTATTGCTATGGATGATATGTCTGTAATTTGTCTCTTTTTTCATCACTCTTACCCCTCTCATCACATTCATGCTACTAAACTTGTAGATTGA 1107 0.3794 MVNFPSFVNGLARTMSIKKDKNFQKDDARKAVEELAKEARKNELLLSSSGVVKSNKDNSFVSVFTHRGQKGVNQDRLIVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPSLLLCNWQRNLAATSIDLGFKVEENKNVHGLNLWEQSYLKTFAAVDQDLKHHPRIDSFRSGSTALTMIKQGENLIISNVGDSRLVLATTSEDGTLLALQLTTDFKPNLPKEAERIEESKGRVFCMKDEPGVYRVWMPNGKTPGLAISRAFGDYCMKEYGLISVPEVTHRKLTTRDQFIILATDGVWDVVSNQEAVNIVCASADKEKASERVVKYAIREWKRKRSGIAMDDMSVICLFFHHSYPSHHIHATKLVD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01102 368 Coils Coil 18 45 - -
Vivi1g01102 368 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Vivi1g01102 368 PANTHER PROTEIN PHOSPHATASE 48 350 IPR015655 GO:0004722|GO:0006470
Vivi1g01102 368 CDD PP2Cc 60 352 IPR001932 -
Vivi1g01102 368 FunFam Probable protein phosphatase 2C 34 51 354 - -
Vivi1g01102 368 Pfam Protein phosphatase 2C 86 332 IPR001932 -
Vivi1g01102 368 SMART PP2C_4 51 350 IPR001932 -
Vivi1g01102 368 SUPERFAMILY PP2C-like 56 353 IPR036457 -
Vivi1g01102 368 Gene3D - 45 355 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01102 Vivi-Chr1 23436082 23437913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01102 1 353 PP2C-type Phosphatase Gene Family AT3G05640 59.155 1.90e-164 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01102 - - gmx:100814087 605.134