Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01096 ATGGGACAAGACTCAGATTCCAAAGCCAAGTTGGTGTTAGATATTTGTTCCATTTCCACACGTTCTGTAACATGTGTTCATACCATTCTTTCAAACCCAACCAAAACAACTTTCATTGACTGGTATTGCATTCTTGGAGTAGAAGAAAATGCAGGGCTCGATACGATTCGCAAGAGATACCATAAACTTGCCTTGCAACTTCACCCAGATAAGAATAAACATCCAAAGGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCAAATGCATGTCTAACTAATGAAGCTACACGCGAAGCTTTTGACTTCGAGAGGTACAAACATTTCTGCATCCAGTGCAAAAGAATTCCATATACATCAGCCAATGTTTCTGTCAATTCAAGTAGTTCGGGTTTCAAGGTGTGGAGTATTATCGCGAGGTCAAGATCTTTAAAGTTTTGGAGAAATATTAAGGATATTAGAGAGAGATTTAAGGAAGAGGCTAATGTGATTGATAAATGTTTGAAAGTAAATTCAATTTCGAGGACAGAATCTTCACTCTACAGTCGAGATAGTTATCTAGGTAGAAGCGAGTCAGTGCGTAGATTTGAGAAAGAGACTCCTGTTTTCAATCCATCAGATTACTTGTACCAAGATTATCCTCATATGAGAGGCCTTGTTAGCAAGAATTCTTCGATGTTTTGGTACTTGCGGACGAATAGTACGCCCCAAAACGAAAAGAGAGGAGCGCGGACTAGTTCTCCGATTTTTGAGGTCAAAAGAAGGAGCATGTTTTCAAACCAATTTGCTTTTGTACCATCAAGATATTAA 807 0.3891 MGQDSDSKAKLVLDICSISTRSVTCVHTILSNPTKTTFIDWYCILGVEENAGLDTIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEANACLTNEATREAFDFERYKHFCIQCKRIPYTSANVSVNSSSSGFKVWSIIARSRSLKFWRNIKDIRERFKEEANVIDKCLKVNSISRTESSLYSRDSYLGRSESVRRFEKETPVFNPSDYLYQDYPHMRGLVSKNSSMFWYLRTNSTPQNEKRGARTSSPIFEVKRRSMFSNQFAFVPSRY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01096 268 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Vivi1g01096 268 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Vivi1g01096 268 SUPERFAMILY Chaperone J-domain 28 104 IPR036869 -
Vivi1g01096 268 Pfam DnaJ domain 40 101 IPR001623 -
Vivi1g01096 268 PANTHER BNAC03G44070D PROTEIN 8 175 - -
Vivi1g01096 268 SMART dnaj_3 39 96 IPR001623 -
Vivi1g01096 268 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vivi1g01096 268 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vivi1g01096 268 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vivi1g01096 268 CDD DnaJ 40 87 IPR001623 -
Vivi1g01096 268 Gene3D DnaJ domain 39 160 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01096 Vivi-Chr1 23335763 23337633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01096 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.909 2.64e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01096 - - gmx:100801809 371.318