Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01094 ATGGGACAAGACTCAGATTCCAAAGCCAAGTTGGTGTTAGATATTTGTTCCATTTCCACACGTTCTGTAACATGTGTTCATACCATTCTTTCAAACCCAACCAAAACAACTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGTCATTCGCAAGAGATACCGTAAACTCGCTTTGCAGCTTCACCCAGATAAGAACAAACATCCAAAAGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCAAATGCGTGTCTAACTAATGCAGCAAAGAGAGAAGCTTTTGATTTTGCAAGGTACAAGCATTTCTGTGTTGAATGCAATAGAATTCCATATACAACAGACAATGTTTCTGGCAATTTCGGAGATTCGGGGTTCAAGGCATGGAATATTTTCACAGGGTCAAGATCTTTAAAATTTTGGAGAAACATTAAGGATATTAGAGAGAGATTTAAGGAGGAGGCTGATGTGATTGAGAATTGTTTGAGAGTAAATTCAATGTCAAGGACAGAATCTCCACTCTACAATCCAGATAGTTATCTAGATAGAAGCAAGTCACAGGCACGGCATAGATTTGAGAAAGAAACCCCTATTTTTAATCCTTCAGATTACCCTTACCAAGATTATCCTCATAGGAGAGGCCATGCTAACAAGAATTCTTCCACATTTTGGTATTTGCAGACAAATAGTATGCTGCACAATGAAAAGAGAGGACCGCAGCTTAGCTCGCCTGTTTTTGAGGTCAAAAGTAGGAGTATGTTTACAAATCAATTTGCTTTTGTACCATCAAGATATTAG 813 0.3862 MGQDSDSKAKLVLDICSISTRSVTCVHTILSNPTKTTFIDWYCILGVEENAGVNVIRKRYRKLALQLHPDKNKHPKAEIAFKLVSEANACLTNAAKREAFDFARYKHFCVECNRIPYTTDNVSGNFGDSGFKAWNIFTGSRSLKFWRNIKDIRERFKEEADVIENCLRVNSMSRTESPLYNPDSYLDRSKSQARHRFEKETPIFNPSDYPYQDYPHRRGHANKNSSTFWYLQTNSMLHNEKRGPQLSSPVFEVKSRSMFTNQFAFVPSRY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01094 270 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Vivi1g01094 270 Gene3D DnaJ domain 39 163 IPR036869 -
Vivi1g01094 270 Pfam DnaJ domain 40 101 IPR001623 -
Vivi1g01094 270 CDD DnaJ 40 87 IPR001623 -
Vivi1g01094 270 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Vivi1g01094 270 PANTHER BNAC03G44070D PROTEIN 8 227 - -
Vivi1g01094 270 SMART dnaj_3 39 96 IPR001623 -
Vivi1g01094 270 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vivi1g01094 270 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vivi1g01094 270 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vivi1g01094 270 SUPERFAMILY Chaperone J-domain 28 105 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01094 Vivi-Chr1 23303561 23337619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01094 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 1.99e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01094 - - gmx:100801809 392.889