Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01089 ATGGCTTCAGCACACATCAGAGACATTCTAACTGCTTTCAATCCCTCTCTCGACTTCTTCGCCATAACCACCGGCGACGGCCGCATTAAGATATGGGATACACTCAAGGGTCAAGTTCAGACCGAGTTCGCGGATTTCACTTCAACTCATGATACTAATTTATTTGATACTAAAGGACATCTCTCTGTTGATTACACATGTATCAAGTGGTTGTCTTTTGAAAGAAAGAAGAAAAGGAAACACTCTACCTCTTTGTTGTTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCTGGAGGTGTCAGGGCCATTTCATCTTTGGCAAACGGATCAACCTTTTATACAGCAGGTGCGGATGGAATGATATGCGCAATAGATTTCACAACAGGAAACTTGTTGGAGAAGTTCAAAGCTTCTTCGAAGGCAGTAACTTCTATATCAGTTTCTCCGGATGGCAAGAAATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATATAAAAAAGCTTGAAAAATTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACAGAAGATGGCAAGTATATCCTTTCGACTGCCGCTGCTGAAAGATACGTTGCTGTTTGGAAATTAGATGATACTAAAAAGCAATCAGCTAGTTGTATTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGAAAGCAGGCGCATTGATAAAGGAGAACATGATGAGGCTGGCTTATGTGTTTTAGCCATATCAGAAGTTGGTGTTTGTTATTTATGGTTTGGAAATAGTATTGAAGAACTACGAAATTCAAAACCCACAAAAATATCATTATCATTGGAAGACATGTCCACAAAAAATTACAAAGGCGCACTCCCTGCAATATATGCTGCAAAATTACAAAGCATTCAGAAGCCCGCCTCTGGGCAGGTTTTTCTTGTATCTGGAATGCTTGTAAAACCATCTTTTCAAAATATTCTTTTGCACTCCGGTACAGACGTGAAGTTGAGTGTCTCTCGTGATGGCATTCTTCTTCCAATGAGTCAATCTCTTGTCAAATCTAAGAAGAAAACAGGTGTACAAAGAGTAACTGCACTAGATCGTGCTAATGCCGAGGATGCCTTGCTTCCAATACCTAAAGTTTTTGATTCTCATGAGAAAGATAAATCATTTCAAGTCACTTCGGACAAGGATGTGGAGGACGATTTGCTTACAAGTGGCACCGATTCCATGGAAATAGATGATGGTATTGTCCAAAGTGAGACTGATGTAATTAGCATGGAGGACCGGATGAGATCACTAGGATTGCTTTACAGTGAGAGTGACTGTGCATCAAATTTTGAACTTCGTTCTAAATTGTTAAAGGGTATTGATCTGGAAGCTACTCTTCCAAAGAAAAAGGTAAGAGCAGCTGTTTTGTCTATGGAACCAAGTGAAGCATTCAAGCTACTAGGAGTGTTGCTGGTTATATGGCAATCAAGGTCGTCTAGCAGGGAGTCCGTGCTTCCATGGATGTACAGCATAGTAGTTACTCACGGTCATAATGCTGCTGAAGAATCTGCAACACATATGCTTGATTTGGTGCACAAGATTACAAATTCCAGAGCGGCAACTCTTCAGTCTTTGTTACAACTATCAGGTCGACTACAATTGGTTACATCGCAGATTGATAAGGCTTCTCAGAAAATAAGCCATCCGGTGAATGATCTCCAATCAGAAGAAAGTGAAGAGGAAGATGAATATTATCACGAGGATAAGGATGATGAAGAAGATGATGCATCCGAAATAAGTACTGATGATGAAAACTAG 1857 0.4039 MASAHIRDILTAFNPSLDFFAITTGDGRIKIWDTLKGQVQTEFADFTSTHDTNLFDTKGHLSVDYTCIKWLSFERKKKRKHSTSLLLLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSTFYTAGADGMICAIDFTTGNLLEKFKASSKAVTSISVSPDGKKLATAAAQLKIFNCSNIKKLEKFSGHPGSVRCMVFTEDGKYILSTAAAERYVAVWKLDDTKKQSASCILAMEHPAVFLESRRIDKGEHDEAGLCVLAISEVGVCYLWFGNSIEELRNSKPTKISLSLEDMSTKNYKGALPAIYAAKLQSIQKPASGQVFLVSGMLVKPSFQNILLHSGTDVKLSVSRDGILLPMSQSLVKSKKKTGVQRVTALDRANAEDALLPIPKVFDSHEKDKSFQVTSDKDVEDDLLTSGTDSMEIDDGIVQSETDVISMEDRMRSLGLLYSESDCASNFELRSKLLKGIDLEATLPKKKVRAAVLSMEPSEAFKLLGVLLVIWQSRSSSRESVLPWMYSIVVTHGHNAAEESATHMLDLVHKITNSRAATLQSLLQLSGRLQLVTSQIDKASQKISHPVNDLQSEESEEEDEYYHEDKDDEEDDASEISTDDEN 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01089 618 MobiDBLite consensus disorder prediction 576 618 - -
Vivi1g01089 618 SUPERFAMILY WD40 repeat-like 12 233 IPR036322 GO:0005515
Vivi1g01089 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Vivi1g01089 618 MobiDBLite consensus disorder prediction 588 618 - -
Vivi1g01089 618 SMART WD40_4 102 142 IPR001680 GO:0005515
Vivi1g01089 618 SMART WD40_4 2 33 IPR001680 GO:0005515
Vivi1g01089 618 SMART WD40_4 185 225 IPR001680 GO:0005515
Vivi1g01089 618 SMART WD40_4 145 182 IPR001680 GO:0005515
Vivi1g01089 618 Pfam WD domain, G-beta repeat 4 33 IPR001680 GO:0005515
Vivi1g01089 618 Pfam WD domain, G-beta repeat 188 225 IPR001680 GO:0005515
Vivi1g01089 618 Gene3D - 141 258 IPR015943 GO:0005515
Vivi1g01089 618 Gene3D - 3 140 IPR015943 GO:0005515
Vivi1g01089 618 Pfam Dip2/Utp12 Family 479 569 IPR007148 -
Vivi1g01089 618 PANTHER OS03G0300300 PROTEIN 3 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01089 Vivi-Chr1 23165483 23173608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01089 107 226 U-box Gene Family AT2G33340 35.484 2.11e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01089 K14546 - gmx:100815458 857.055