Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01075 ATGGCGAATCGCGATAATTTCACACACGACGTTTTCCTGAGTTTCAGAGGCAAAACTCGCTACTCCTTCACCGATCATCTCTACCGTTCACTTCTCCGCCACGGAATCATCGTCTTCAGAGACGATCAAAATCTCAAAATCGGCAACGAAATCGGACCTTCACTTCTACATGCAATCGAAGGTTCCAGAATCTCGATTGTTGTGCTGTGTCGTGACTACGCTTCTTCCACTTGGTGCCTTGACGAACTTGTTAAGATCGTTGACTGTTATTATGAAAGGAAGGGGAGAACAGTTTTGGTTGTTTTCTATAAGGTGGAACCTTCTGATGTTAGGTATCAGAGAAATAGTTATGAAGTTGCTATGGCTGAACATGAGAAGAGATTTGGAAGCGAATCGGAGAAGGTGAAGGCCTGGAGATTGGCTTTGAACAGAGTTTCTGCTCTTAGCGGATTACATTGCAAGGACGATAGTTATGAATCTGAATTTATTGAGAAGATTGTTAGAGACATCTCTGCTAAACTAACTCCCATGCCTTTACAAATCAAGCACCTAGTCGGACTCGATTCTCGTTTCGAACAGGTGAAATCTCTTATTGATATTGATTCTGATGATACTGTTAGCATGTTGGGGATTTATGGAGCTGGTGGAATAGGCAAAACCACATTTGCCTTGGATATATATAACAAAATCAGAAATCGATTTGAAGCTGCAAGTTTTCTTGCTAATGTAAGAGAAAAATCAAATGAAAGCACTACAGGTCTGGAAGATCTCCAAAGGACACTTTTGTATGAGATGGGTGAGGAATCAAAAACCATGTTGGGAAGCACATTTAGAGGAAGTTCTGAAATAAAGAACAGTCTTGCCAAAAAAAGAGTTCTTCTGATAGTAGATGATGTTGATTCAGTAAAACAAATGGAATCACTAGCTGGAGGACATGATTGGTTTGGTTCTGGTAGTAGAATCATAGTAACAACAAGGGATACAGATGTTCTGCATAAACATGATGTTAGAATAAAAACATATAAACTCGAAGAGCTAAACCATCGTGAGTCCATTGAACTCTTTTGTTGGCATGCCTTTAATATGAGCATACCTGTAGAAAATTTTGCAAAAATCTGTTCTCATGCAATAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGAGTAATAGGATCCAATTTGAAAGCTAAGAGCATAGAGGAGTGGGATATTGAACTGCAAAAATATAGAAAGGTTCCAGATGCTGAGATTCAAGGTGTACTAGAAATAAGCTACAAATGCCTATCCGACTTGGACCGGAAAATTTTTCTAGACATTGCTTGTTTTTTCAAAGGGGAAAGATGGGATTATGTTAAAAGGATACTAGATGCTTGTGATTTCTTCCCAGTTATTCGAGTATTTGTTAGTAAATGTCTCATGACAATTGATGAAAATGGTTGTTTAGAAATGCATGATCTAATCCAAGACATGGGTAGAGATATTGTTCGGAAGGAATCAACATCAAACCCAGGGGAACGCACCAGATTATGGTCCCATAGAGAAGTTCTTGATGTACTGAGAGGAAATTTAGGAAGTGCCAAGGTTGAAGGAGTAATGCTTCATCCCCCAAAACAAGAAAAAGTAGATCACTGGGCTTGTAATGCCTTTAAGAAGATGAAAAACCTTAGAATCTTAATTGTTAGGAATACATTGTTTTCATCAGGACCTAGTAATCTTCCGAATAGTTTACGGTTACTCGATTGGAAGTGGTACTCATCAAAGAATTTCCCGCCAGATTTTTATCCGTATAGAATTGTTGACATCAAGTTACCTCATAGCTCGATGATATTGAAAAAGCCCTTTCAAATTTTTGGGGATTTAACATTCATCAATCTCTCTCATAGTCAATCCATAACTCAAATTCCTGATCTATCTGGAGCTAAAAACATAAGAGTGCTTACACTTGATAAATGCCACAAACTAGCAAAGTTTGATATATCTGTTGGATTTATGCCTAATTTGGTGTATTTAAGTGCTTCAGGGTGCCCTGAGCTCAAAAGTTTTGTGCCAAAAATGTATTTGCCCTCCCTTCAAGTGCTTTCATTTAATTTCTGCAAAAAATTTGAACACTTCCCACAAGTAATGCAAAAGATGGATAGGCCATTAAAGATTCACAAGATAAGTACTGCAATTAAGGAGTTTCCAAAATCAATTGGTAACCTTACAGGCCTTGAGTATATAGACATGTCAATTTGCAAAGGGCTCAAAGATCTATCAAGTAGCTTCTTATTGCTTCCAAAGCTGATCTCTTTGAAAATTGATGGATGCTCTCAAGTAGGAGAATCATTTCAAAGGTTCAAAGAGCGCCATTCAGTGGCAAACGGCTATCCAAATTTAGAAACACTTCATTTTAGCGAGGCTAATCTATCATTTGAAGATCTTAATGCTATTATTGAAATATTTCCAAAACTGGAAGATTTGAAAGTTTCACACAATGGGTTTGTTGCCCTCCCAAATTGCATCAGAGGATCTATTCACTTGAAAAATCTTGATGTGAGCTTTTGCAGGAATCTTACAGGAGTTCCAGAACTTCCATTGAGTATTCAGAAAATAGATGCAAGACACTGTCAATCCTTAACTTCAGAGGCATCAAGTTGGCTCTGGTCTAAGGTTTCACAAGAAATCCAAAGAATACAAGTTGTAATGCCAATGCCGAAAATGGAGATTCCAGAATGGTTTGACTGCGTTAGCACTCAAGAGATTCCACTTTTTTGGGCTCGACGGAAGTTTCCCGTTGTTGCTTTAGCATTAGTGTTCCAAAAACAGACAGACAGTAATTTTAAATTTGTAGATTATATAAATTTGTTGACTGGAGTCAAAGACTGGCACACTGTTAGCCTCCATTTGTTTATTGATGGCCGAGAAATATGTGGCAGGGATTTCCATTATTTCAATGTAGGGGAAGATCATGTGCTATTGTGTGACCTGCGAATTTTGTTTAGTGATGAAGAATGGCAGGACCTTGATGCAAGTCTTGAAGATGACTGGAAGGCCATTCAGGTTCAATATGATTCGGACTTGATTTTGATCAAGTGGGGAGTTTATGTGTACAAGCAAGAAACAAGCATGGACGATATCCAATTCATACCTCCCAATCGCAGTTCATGTTCCTACATGCCATCGTCATGTTTGGTTCCAAAGGGGACACCAGAGCAGCAAATGAAACATGTGCTGGAAAATTTTAATCCAAGAGACATGTTTAATGAGTATTTGCCTCTATTAGAATCAGATGAAGGTCCAGTTGGGTCTTTAAAAGTGCTTTTGCGGTCTTTGAGAAATGTCAAGGCTGAAGTTATAGAAAAGACTTCTTCCTCTGCCTATGGGGCAAGTCTAAAGCAAGACCGTGAAGATTCTGTAGAGCATGTGATTCAAGTATTAGAGATGATAGAAGAGAATATATCAGAACATTTTGCTGATTTATCTCCTGAAGATCTTCAAATTGCAAGTGGAGTTCTGGAAAGGATATTGAGGGCACAGGTTGAATTAACGGAAGACAATAGCTTGGACATCGGTATGCCTATTATTCTAGAGTATACTGATGCATTGGGAGCAAGAAACCGACGCCTTTGGGGAACCATGGAGATAAAACTGGGAGATCCATTTTACAAACCAGTGTTGAAGAGGCAAAACCAACTTTCCTGGGGACTTGGGACTAGCAATGAAGCCTCGACACCTGACCTAAAGGTGATAATTGTTGAATTGAAATGCCAGCCTGCAGGTACAGAGGAAGCTTCAAGCTCTAGCATTGAAGAATCCTTGGAGGAAGGAAACTACAATCCTGAATTGGAAGAGTTAATGAGAAGGATAGAGCAAGATGCTATGAACTTGAATAAATCTTATGGGAAAATTAAGGCATCTATTGTTCAAACTGACGAGTCATTTTCTGAAAATCATCTATTGGAAGCATTAATCTTTAGAAGACTAATGATTTTGGGAAAATTAACAATGTTTGGATCCGCAACCAAGTTCAAGATCACACCTTATGGGAAGATGAGGGCAGAAGACGAACCTTTCCGCAAACTGAGGACATGTTTCTGGTGTTTAGTCTTTGTTCTTCTTGCTCTTATTATAGGGTCATTTTATTTCATTGTATGTGTATGCCGTTATATTTATAGGATACCAATAATAAGGAAGTTGTTAATGTGGGGTTGGTGGCTTGTCAAACAAATTTTTTTATCTTGTAAAAAATTATACAGGGGAATTGGCAAGATTATCATGAGAATAAAGGAGAAGGAATTGTAG 4281 0.3831 MANRDNFTHDVFLSFRGKTRYSFTDHLYRSLLRHGIIVFRDDQNLKIGNEIGPSLLHAIEGSRISIVVLCRDYASSTWCLDELVKIVDCYYERKGRTVLVVFYKVEPSDVRYQRNSYEVAMAEHEKRFGSESEKVKAWRLALNRVSALSGLHCKDDSYESEFIEKIVRDISAKLTPMPLQIKHLVGLDSRFEQVKSLIDIDSDDTVSMLGIYGAGGIGKTTFALDIYNKIRNRFEAASFLANVREKSNESTTGLEDLQRTLLYEMGEESKTMLGSTFRGSSEIKNSLAKKRVLLIVDDVDSVKQMESLAGGHDWFGSGSRIIVTTRDTDVLHKHDVRIKTYKLEELNHRESIELFCWHAFNMSIPVENFAKICSHAISYAKGIPLALRVIGSNLKAKSIEEWDIELQKYRKVPDAEIQGVLEISYKCLSDLDRKIFLDIACFFKGERWDYVKRILDACDFFPVIRVFVSKCLMTIDENGCLEMHDLIQDMGRDIVRKESTSNPGERTRLWSHREVLDVLRGNLGSAKVEGVMLHPPKQEKVDHWACNAFKKMKNLRILIVRNTLFSSGPSNLPNSLRLLDWKWYSSKNFPPDFYPYRIVDIKLPHSSMILKKPFQIFGDLTFINLSHSQSITQIPDLSGAKNIRVLTLDKCHKLAKFDISVGFMPNLVYLSASGCPELKSFVPKMYLPSLQVLSFNFCKKFEHFPQVMQKMDRPLKIHKISTAIKEFPKSIGNLTGLEYIDMSICKGLKDLSSSFLLLPKLISLKIDGCSQVGESFQRFKERHSVANGYPNLETLHFSEANLSFEDLNAIIEIFPKLEDLKVSHNGFVALPNCIRGSIHLKNLDVSFCRNLTGVPELPLSIQKIDARHCQSLTSEASSWLWSKVSQEIQRIQVVMPMPKMEIPEWFDCVSTQEIPLFWARRKFPVVALALVFQKQTDSNFKFVDYINLLTGVKDWHTVSLHLFIDGREICGRDFHYFNVGEDHVLLCDLRILFSDEEWQDLDASLEDDWKAIQVQYDSDLILIKWGVYVYKQETSMDDIQFIPPNRSSCSYMPSSCLVPKGTPEQQMKHVLENFNPRDMFNEYLPLLESDEGPVGSLKVLLRSLRNVKAEVIEKTSSSAYGASLKQDREDSVEHVIQVLEMIEENISEHFADLSPEDLQIASGVLERILRAQVELTEDNSLDIGMPIILEYTDALGARNRRLWGTMEIKLGDPFYKPVLKRQNQLSWGLGTSNEASTPDLKVIIVELKCQPAGTEEASSSSIEESLEEGNYNPELEELMRRIEQDAMNLNKSYGKIKASIVQTDESFSENHLLEALIFRRLMILGKLTMFGSATKFKITPYGKMRAEDEPFRKLRTCFWCLVFVLLALIIGSFYFIVCVCRYIYRIPIIRKLLMWGWWLVKQIFLSCKKLYRGIGKIIMRIKEKEL 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01075 1426 SMART till_3 8 148 IPR000157 GO:0007165
Vivi1g01075 1426 Pfam TIR domain 9 182 IPR000157 GO:0007165
Vivi1g01075 1426 Coils Coil 1272 1292 - -
Vivi1g01075 1426 SUPERFAMILY "Winged helix" DNA-binding domain 416 519 IPR036390 -
Vivi1g01075 1426 Gene3D Ribonuclease Inhibitor 543 717 IPR032675 -
Vivi1g01075 1426 Gene3D Ribonuclease Inhibitor 718 892 IPR032675 -
Vivi1g01075 1426 ProSiteProfiles TIR domain profile. 7 174 IPR000157 GO:0007165
Vivi1g01075 1426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 771 IPR044974 GO:0006952
Vivi1g01075 1426 Gene3D - 175 341 IPR027417 -
Vivi1g01075 1426 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 176 - -
Vivi1g01075 1426 PRINTS Disease resistance protein signature 208 223 - -
Vivi1g01075 1426 PRINTS Disease resistance protein signature 380 394 - -
Vivi1g01075 1426 PRINTS Disease resistance protein signature 732 748 - -
Vivi1g01075 1426 PRINTS Disease resistance protein signature 286 300 - -
Vivi1g01075 1426 Gene3D - 345 429 IPR042197 -
Vivi1g01075 1426 Gene3D - 7 174 IPR035897 -
Vivi1g01075 1426 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 150 IPR035897 -
Vivi1g01075 1426 Pfam NB-ARC domain 195 403 IPR002182 GO:0043531
Vivi1g01075 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 439 IPR027417 -
Vivi1g01075 1426 SUPERFAMILY L domain-like 539 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01075 Vivi-Chr1 23009965 23015886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01075 23 781 WRKY Transcription Factor Family AT4G12020 30.897 2.13e-81 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01075 - - cam:101493067 1899.4