Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01063 ATGAATCTTACTAACGGTAAAGGATCCATTTCTACGGTTACTACTACAACTGTTTCTATGAAATCCGGTGAAGGTTCCGATCAGTTCCCGGCGGGTTTGCGAGTTCTCGTTGTGGATGATGATCCCACGTGTCTGAAAATCCTCGAGAAGATGCTGAGGTCGTGTTATTATGAAGTTACGCAGTGCAATCGAGCGGAAGCTGCACTTTCACTACTCAGGGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCGGATATGGATGGATTTAAGCTCTTGGAACACATTGGATTGGAAATGGATCTTCCGGTTATTATGATGTCTGCGGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACACGGTGCTTGTGATTACCTGATTAAACCGGTTCGTATGGAGGCTTTGAAGAACATATGGCAACATGTGGTTCGGAAGAAAAAGCATGACTGGAAAGATTCAGAACAGTCGGGTAGTGCTGATGAAGGAGATCGGCATCCAAAGGCGTCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAAGTAATTGGAGAAGCTCGAGAAAGAGAAGGGATGATGAAGAGGACGGTGATGATAGAGATGACTCCTCCACACTAAAGAAGCCTCGGGTTGTTTGGTCTGTCGAGCTTCATCAACAGTTTGTGGCTGCTGTCGATCAACTAGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCCGGGCTCACCCGAGAAAATGTCGCTAGCCACCTGCAGAAATATCGATTGTATCTTCGAAGATTGAGTGGAGTTTCTCAGCACCAGAACAACTCATTTCTCAGCCCGCAAGAGGCGTCATTCGGGACGATTTCATCGATGAATGGTCTTGATCTGCAAACTCTTGCAGCTGCGGGCCAGCTTCCAGCACAAAGTTTAGCGACTCTTCAAGCTGCGGGACTCGGTAGGTCAGCTGTGAAATCAGGCTTACCTATGCCTCTTATGGATCAAAGAAACCTTTTCAGTTTCGAAAACCCGAGGTTGAGATTTGGAGAAGGGCAGCAACAACTTTTGAGCAATAATAAACCGACAAATCTTCTTCACGGAGTTCCAACTAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTGCAGCTCAATCCCTTGGCAACTTGAATATGCGAGTCCCTGGCACGTCACCACAGGGAAATCCTTTATTGATGCAGATGCCACAACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATATCAGTCCCCGTATTCCCAGACTACCGAACCTCTTGGGGCAGTCTACTGTATCAAATGGAATTTCCGACGGTCTTTTAGGGAGAAACGGCATAGCTAGTAGCAGCAGAGGGCCTTCATTTAATTCTGTTCCACAGAGCTCTATGTTTTTTAATTCTCCCATGAATCAAAGCACTGAAATGTCTGTTACTAGTTTTCCTCTCGGAAGCACTCCAGGTATATCTAGTATCACAACCAAAGGCACATTTCAGCCCGAAGTTAATTCGGGTATCAAAGGATCAGCTGGATTTCCAAGTTATGATATTTTTAACGAACTGAACCATCAGAAGCCTCGGGACTGGGGAATGACAAACCCTGGTCTAACATATGATTCCTCGCAGCATGCAAATCCTTTACATGGTAACATCGATGTCTCGCCATCAGTTTTGGTCCGTCAGGGTCAGGGTTATTCTTCTACGCCACAAAATGGACATAACAGAGATAACTCTTTGATTGGAAAATCTCCTTTTTCTCTAGGAGAAAGCTCGGAACAAGGTAATTTCCAAAATGGCGTTCAAAACTTCAATCCCCTTGTTGAAAATTCAACAAGGGTTATTAAGTCTGAAATGGTTCCAGACGCGAGCTCCCAGACTAATCTCTTCCCCGATCATTACGGACAGGAGGATCTTATGAGTGTACTTCTGAAACAGGAAGGCATTGTACAAGGCGAGAATGAGTTTGACTTCGACGGATATTCTCTGGACAACATTCCTGTCTAG 2037 0.4453 MNLTNGKGSISTVTTTTVSMKSGEGSDQFPAGLRVLVVDDDPTCLKILEKMLRSCYYEVTQCNRAEAALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRMEALKNIWQHVVRKKKHDWKDSEQSGSADEGDRHPKASDDADYSSSANESNWRSSRKRRDDEEDGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNSFLSPQEASFGTISSMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSAVKSGLPMPLMDQRNLFSFENPRLRFGEGQQQLLSNNKPTNLLHGVPTNMEPKQLANLHQSAAQSLGNLNMRVPGTSPQGNPLLMQMPQQSQPRGQMLSENISPRIPRLPNLLGQSTVSNGISDGLLGRNGIASSSRGPSFNSVPQSSMFFNSPMNQSTEMSVTSFPLGSTPGISSITTKGTFQPEVNSGIKGSAGFPSYDIFNELNHQKPRDWGMTNPGLTYDSSQHANPLHGNIDVSPSVLVRQGQGYSSTPQNGHNRDNSLIGKSPFSLGESSEQGNFQNGVQNFNPLVENSTRVIKSEMVPDASSQTNLFPDHYGQEDLMSVLLKQEGIVQGENEFDFDGYSLDNIPV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01063 678 MobiDBLite consensus disorder prediction 155 177 - -
Vivi1g01063 678 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vivi1g01063 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 324 IPR045279 GO:0009736
Vivi1g01063 678 PIRSF RR_ARR_type-B 15 670 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi1g01063 678 SMART REC_2 33 145 IPR001789 GO:0000160
Vivi1g01063 678 MobiDBLite consensus disorder prediction 572 613 - -
Vivi1g01063 678 Gene3D - 33 206 - -
Vivi1g01063 678 FunFam Two-component response regulator 33 170 - -
Vivi1g01063 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Vivi1g01063 678 CDD REC_typeB_ARR-like 35 149 - -
Vivi1g01063 678 MobiDBLite consensus disorder prediction 189 210 - -
Vivi1g01063 678 FunFam Two-component response regulator 209 272 - -
Vivi1g01063 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Vivi1g01063 678 MobiDBLite consensus disorder prediction 155 210 - -
Vivi1g01063 678 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Vivi1g01063 678 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vivi1g01063 678 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Vivi1g01063 678 Gene3D - 210 272 - -
Vivi1g01063 678 SUPERFAMILY CheY-like 32 153 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01063 Vivi-Chr1 22602948 22607061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01063 68 678 Response Regulator Gene Family AT3G16857 51.761 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi1g01063 Response_reg 7.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01063 - K14491 gmx:100814930 1031.55