Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01060 ATGGTGGTTGATCATAGCGGAAAGGGATCAGAAGCTGAAGATTCAAACCCTAACGCCGTCTCATCGGAAAACAGTCCAAAGAAAACCTGTGCCGATTGCGGAACTTCCAAAACACCTCTATGGCGAGGCGGTCCTGCAGGTCCAAAGTCTTTGTGTAATGCTTGCGGGATCAGGAGCAGGAAGAAAAAGAGAGCGATCTTAGGGATAAGCAAAGGAAACAACGACGACGGAACGAGAAAGGGGAAAAAGAGTAACGGAAGTGGCGGAAGCAAGGTTGGAGATAATTTGAGCATGAAGCAGAGACTATTGAATTTGGGGAAAGAAGTGTTTATGCAGAGATCGCATTGGAAGAAATTGGGAGAAGAAGAAAAAGCTGCGGTGCTTTTGATGTCGTTATCTTATGGATCCGTTTATGCCTAA 420 0.4571 MVVDHSGKGSEAEDSNPNAVSSENSPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNDDGTRKGKKSNGSGGSKVGDNLSMKQRLLNLGKEVFMQRSHWKKLGEEEKAAVLLMSLSYGSVYA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01060 139 ProSitePatterns GATA-type zinc finger domain. 30 55 IPR000679 GO:0006355|GO:0043565
Vivi1g01060 139 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 24 64 - -
Vivi1g01060 139 MobiDBLite consensus disorder prediction 1 48 - -
Vivi1g01060 139 Gene3D - 25 92 IPR013088 GO:0006355|GO:0008270
Vivi1g01060 139 MobiDBLite consensus disorder prediction 12 32 - -
Vivi1g01060 139 ProSiteProfiles GATA-type zinc finger domain profile. 24 60 IPR000679 GO:0006355|GO:0043565
Vivi1g01060 139 PANTHER OS01G0976800 PROTEIN 11 139 - -
Vivi1g01060 139 SMART GATA_3 24 77 IPR000679 GO:0006355|GO:0043565
Vivi1g01060 139 MobiDBLite consensus disorder prediction 66 96 - -
Vivi1g01060 139 CDD ZnF_GATA 29 83 IPR000679 GO:0006355|GO:0043565
Vivi1g01060 139 Pfam GATA zinc finger 30 64 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01060 Vivi-Chr1 22494389 22495488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01060 1 139 C2C2-Gata Transcription Factor Family AT5G49300 54.286 1.48e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g01060 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01060 - - aprc:113847917 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01060 1 22494389 22495488 Vivi1g01060 1 22494389 22495488 ECH