Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01059 ATGTCGCTTCGCCCAAATGAAAGAACCGATGCTCGCCGTAACCGCTACAAGGTCGCCGTCGACGCCAACGACGGTCGCCGGAGACGTGAAGACAATATGATCGAGATTCGCAAGAACAAGCGTGAAGAAAGCTTGCAGAAGAAACGTCGCGAAGGCCTTCAATCTCAGGAGCAGTCCCCCACTCTCGACAAGAAGCTTGAGAGTCTTCCTTCAATGGTTGTCGGCGTTTGTTCGGACGATCGCAGTGCTCAACTTGAAGCCACCATACTGTTTCGGAAGCTACTCTCAATAGAACAAAGTCCTCCGATTGAGAGCGTTATTCAATCTGGTGTTGTGCCACGTTTGGTTGAGTTTCTTGCCAGGGAGGATTTCCCTCAACTCCAGTTTGAGGCTGCATGGACTCTGACAAACATTGCCTCTGGAACTTCTGAGAACACTAAAGTGGTGGTTGATCATGGTGCAGTTCCTGCATTTGTCTCGTTGCTTAGGTCACCTATTGATGAAGTTCGAGAGCAGGCCGCGTGGGCTTTGGGAAATATTGCTGGTGACTCCCCCGGGGGTCGCAATCTAGTGCTTGGTCATGGTGGCCTTATCTCACTGTTAGCCCTGATAAACGACCACGCCAAACTTTCAATACGGAGAAATGCGACGTGGACATTATCAAACTTATGTAGGGGAAAGCCACAACCTCCATTTGAGCTGGTGAGGCCTGCTCTTCCAGTTCTTGGGCGTTTGGTTTTGTCGGATGATGAAGAAATTTTGGCAGATGCTTGCTGGGCTTTATCATACCTTTCTGATGACTCAAATGATAAAATACAAGAAATTATTGATGCGGGTGTATGTGGCCGACTGGCGCAGCTCCTTCAACACCCATCTCCTTCAGTATTGATTCCTGTTGTTCGTACAGTTGGAAATATTGTGACTGGAGATGATATGCAGACTCAGGTGATGGTCAATTACGGTGCACTCCCTTGCCTTTTGAATATTTTGATACAAACTCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGGCTATATCCAACATTACAGCTGGAAATAAGGAACAAATACAGGCTGTTATCGAAGTTGGCGTTATTCCTCCGCTTGTGAGTCTTCTTCAACACGCAGATTTTGACATGAAAAAGGAAGCTGCTTGGGCAACAACAAATGCTACAGCGGGTGGAACTCTTAAGCAGATCAAGTACTTGGTGGATCAGGGTTGCATAAAACCACTATGTGATTTGCTTGTTTGCCCCGATGCAAGAATTGTCGCGGTCTGTTTAGAGGGCTTAGAGAATATTTTGGTTGCTGGAGAAGCAGAGAAGAGTAATTCTGAAGATGCCAACTTGTATGCTGAGATGATAGAGGATTCCGAGGGATTGGAGAAAATTGAAAATCTGCAGAATCACGACAACGATGAAATATATGAGAAGGCTGTTAAACTTCTTGAAACATACTGGATGGAAGAGAAAGATGAGGTACTACCACCAGGCCATGGTGATCAATCTGGTTTCAACTTTGCAAGCAAAGAGCCTTCATTACCACCTGGTGGATTCAAATTCGGTTGA 1569 0.4589 MSLRPNERTDARRNRYKVAVDANDGRRRREDNMIEIRKNKREESLQKKRREGLQSQEQSPTLDKKLESLPSMVVGVCSDDRSAQLEATILFRKLLSIEQSPPIESVIQSGVVPRLVEFLAREDFPQLQFEAAWTLTNIASGTSENTKVVVDHGAVPAFVSLLRSPIDEVREQAAWALGNIAGDSPGGRNLVLGHGGLISLLALINDHAKLSIRRNATWTLSNLCRGKPQPPFELVRPALPVLGRLVLSDDEEILADACWALSYLSDDSNDKIQEIIDAGVCGRLAQLLQHPSPSVLIPVVRTVGNIVTGDDMQTQVMVNYGALPCLLNILIQTHKKSIKKEACWAISNITAGNKEQIQAVIEVGVIPPLVSLLQHADFDMKKEAAWATTNATAGGTLKQIKYLVDQGCIKPLCDLLVCPDARIVAVCLEGLENILVAGEAEKSNSEDANLYAEMIEDSEGLEKIENLQNHDNDEIYEKAVKLLETYWMEEKDEVLPPGHGDQSGFNFASKEPSLPPGGFKFG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01059 522 SUPERFAMILY ARM repeat 5 492 IPR016024 -
Vivi1g01059 522 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 110 153 IPR000225 GO:0005515
Vivi1g01059 522 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 195 IPR000225 GO:0005515
Vivi1g01059 522 FunFam Importin subunit alpha 11 50 - -
Vivi1g01059 522 Pfam Importin beta binding domain 12 88 IPR002652 GO:0006606|GO:0061608
Vivi1g01059 522 PIRSF Importin_alpha 2 521 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vivi1g01059 522 MobiDBLite consensus disorder prediction 1 54 - -
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 185 225 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 398 434 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 353 392 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 311 351 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 142 181 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 234 265 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 100 140 IPR000225 GO:0005515
Vivi1g01059 522 Pfam Armadillo/beta-catenin-like repeat 268 307 IPR000225 GO:0005515
Vivi1g01059 522 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vivi1g01059 522 FunFam Importin subunit alpha 67 488 - -
Vivi1g01059 522 Pfam Atypical Arm repeat 449 493 IPR032413 -
Vivi1g01059 522 SMART arm_5 142 182 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 268 308 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 183 225 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 99 140 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 353 393 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 227 266 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 310 351 IPR000225 GO:0005515
Vivi1g01059 522 SMART arm_5 396 436 IPR000225 GO:0005515
Vivi1g01059 522 MobiDBLite consensus disorder prediction 1 65 - -
Vivi1g01059 522 Gene3D - 10 50 IPR036975 GO:0006606
Vivi1g01059 522 PANTHER IMPORTIN ALPHA 12 492 - -
Vivi1g01059 522 Gene3D - 67 488 IPR011989 -
Vivi1g01059 522 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 364 IPR000225 GO:0005515
Vivi1g01059 522 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01059 Vivi-Chr1 22479136 22482120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01059 275 411 U-box Gene Family AT5G42340 27.737 4.26e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01059 K15042 - gmx:100780020 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01059 1 22479136 22482120 Vivi4g02828 4 133928559 133932772 PCT