Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01052 ATGGAAAATAATTTATTGGGTCAACAACTAGTTGGATCAGATATACATGGATTCCACACATTGCAAGACCTGGATGTTGCAAGCATTATGGAGGAGGCAAAAATGAGATGGCTTCGCCCTAATGAGATTCATGCCATGCTTTGTAATCGAAAGTATTTCACTATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGTAAGATGCTTCGGAATTTTAGAAAAGATGGACACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAGGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAAGATAACCCAAACTTTGTCCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATTGTCCTAGTTCATTACCGTGAAACACGGGAGTTTCAAGGATCTCCCATCACTCCAGTAAATTCAAACTCTACTTCTGCCTCTGACCCAACCGCACCATGGATTTTGTCGGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGTGATATTAATAACAATATAACAGTCAAAAGTCATGAACTGAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTAGTTGTTGGGAATGATCTTAACACCTCAACTGTACCTAATGGAGGAAAAATTCCATATTTTGATCAACAAAATCAATGTTTACCGAATGACAGTTCTGGCAATGTAGCCAGCAATGCATCTGCCGAAGTTTGTTCTTCCAATATTTCAACTCAGCCAATTCCAGGGAGCTACAGTGTTCCATTCAATTTTCCAGAAAGTGTTACTCTTCAGACAATTGACAATCAAGGAAATCGAAATGAACCGAGGAACCATCACATCCCTTCAAGTGGCGTTGATTCCTTAAACACTTTGATCAATGACAGATTGCAAAGTCAAAACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATCTTGGATCCTCAGTTTCATCCGTTGACAAACCGTATTCATCTGTGGTAGTGGATAATCAACAACTTTCCCTTCCAGAACAAATATTTAATCTCACCGATGTGTTCCCTGCATGGGTGTCTTCCACAGAGAAATCAAAGATCGTAGTCACTGGACTTTTTCAAATAGACTATCTACACCTCTCAAAGTCCAATCTAACATGTGTCTGTGGTGATGAAGTCATTCCTGCAGAAATTGTTCAGGACGGGGTATACCGATGTTGGGTACCACCGCATCCTCCGGGATTCGTGAATCTCTACTTGAGCTTAGATGGCCATAATCCAATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGATCCAGTTGCTTCTGTGGAAGAAAAGAACAACTGGGACGAATTTCAACTTCAGATGAGGCTTGCTTATTTGCTCTTTTCTAAACAGCTGAGTCTTGATGTCATCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGAGAATTCTCCTTAAAGACGTCATTTATTTCCAATACCTGGCAATACTTACTGGAGTCAACTAAAGATCGCAAAATTCCATTTTCGCAAGCAAAAGATGCCCTGTTTGGAATTGCTTTGAAAAACAGATTAAAGGAATGGCTTTCGGAAAAAATTGTTTTAGGATGTAAGATTACTGAATATGATGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGGATATACATGGGCGGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTCCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTATCAGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCAGCAAAACCCTGGTGGATATACTGCCTCTGATCTTGCTCACACGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAATTCAATGACATGCGCATAGCTGGAAATATCAGTGGCTCGCTGGAAACTAGCACGGATGATGCAGTAAATTCCGAGAACCTTACCGAGGAGCAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCCGCCGATGCAGCTGCACGCATCCAACAAGCATATAGGGAGCATTCCTTAAAGTTACAAACAGAGGCGGTTGAGTTTTCCAGTCCAGAAGCTGAAGCACGCAAAATAGTCGCAGCAATGAAGATTCAGCACGCCTTCCGCAATTTTGAGACCAAAAAAGTCATGGCTGCTGCTGCTCGCATACAATATAGATTCCGTACATGGAAGATTCGTAAAGATTTCCTCAACATGCGCCGTCAAGTTATCAAGATTCAAGCTGCTTTCCGGTGCTTTCAACAACGGAAACATTATTGTAAAATTCTTTGGTCAGTTGGTGTGGTTGAGAAAGCAGTGCTACGTTGGCGTTTAAAGAGAAAAGGCTTCCGCGGGCTCCAGCTTAATACTGCAGAAGCAGAGGGAGATCAGAATCAGCAAAGTGACGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGAACGAGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAAAAAGTGCAAGAAGATTACAGGAGGATGAAGTTGGCACTTAAGCAAGCAAAGATGGAACGGGAATACGAAAAGGTGATTAGTTCTGAAGTTGACATGGCAACCAAGAGATAG 2766 0.4143 MENNLLGQQLVGSDIHGFHTLQDLDVASIMEEAKMRWLRPNEIHAMLCNRKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETREFQGSPITPVNSNSTSASDPTAPWILSEEIDSGTKTAYAGDINNNITVKSHELRLHELNTLEWDELVVGNDLNTSTVPNGGKIPYFDQQNQCLPNDSSGNVASNASAEVCSSNISTQPIPGSYSVPFNFPESVTLQTIDNQGNRNEPRNHHIPSSGVDSLNTLINDRLQSQNSFGMWVNQIMSDSPCSVDDLGSSVSSVDKPYSSVVVDNQQLSLPEQIFNLTDVFPAWVSSTEKSKIVVTGLFQIDYLHLSKSNLTCVCGDEVIPAEIVQDGVYRCWVPPHPPGFVNLYLSLDGHNPISQVVNFEYRTPILHDPVASVEEKNNWDEFQLQMRLAYLLFSKQLSLDVISSKVSSSRLKEAREFSLKTSFISNTWQYLLESTKDRKIPFSQAKDALFGIALKNRLKEWLSEKIVLGCKITEYDAQGQSVIHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTQQNPGGYTASDLAHTRGYDGLAAYLSEKSLVEQFNDMRIAGNISGSLETSTDDAVNSENLTEEQLYLKDTLAAYRTAADAAARIQQAYREHSLKLQTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQYRFRTWKIRKDFLNMRRQVIKIQAAFRCFQQRKHYCKILWSVGVVEKAVLRWRLKRKGFRGLQLNTAEAEGDQNQQSDAEEEFFKTGRKQAEERVERSVIRVQAMFRSKKVQEDYRRMKLALKQAKMEREYEKVISSEVDMATKR 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01052 921 Pfam IPT/TIG domain 369 454 IPR002909 -
Vivi1g01052 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 818 IPR027417 -
Vivi1g01052 921 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Vivi1g01052 921 Pfam IQ calmodulin-binding motif 793 811 IPR000048 GO:0005515
Vivi1g01052 921 SMART CG_1_2 29 147 IPR005559 GO:0003677
Vivi1g01052 921 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Vivi1g01052 921 SMART ANK_2a 604 633 IPR002110 GO:0005515
Vivi1g01052 921 Gene3D - 765 815 - -
Vivi1g01052 921 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Vivi1g01052 921 SMART iq_5 790 812 IPR000048 GO:0005515
Vivi1g01052 921 SMART iq_5 767 789 IPR000048 GO:0005515
Vivi1g01052 921 SMART iq_5 870 892 IPR000048 GO:0005515
Vivi1g01052 921 Coils Coil 884 904 - -
Vivi1g01052 921 Gene3D Immunoglobulins 363 458 IPR013783 -
Vivi1g01052 921 Pfam Ankyrin repeats (3 copies) 561 633 IPR002110 GO:0005515
Vivi1g01052 921 SUPERFAMILY Ankyrin repeat 545 666 IPR036770 -
Vivi1g01052 921 Gene3D - 531 673 IPR036770 -
Vivi1g01052 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 900 - -
Vivi1g01052 921 FunFam calmodulin-binding transcription activator 5 534 674 - -
Vivi1g01052 921 ProSiteProfiles IQ motif profile. 769 797 IPR000048 GO:0005515
Vivi1g01052 921 SUPERFAMILY E set domains 368 455 IPR014756 -
Vivi1g01052 921 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Vivi1g01052 921 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Vivi1g01052 921 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01052 Vivi-Chr1 22371474 22379335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01052 29 904 CAMTA Transcription Factor Family AT3G16940 53.916 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi1g01052 CG-1 1.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01052 K21596 - gmx:100793970 1460.66