Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01022 ATGACAGGAACTGAAGAAAGAGATGAAGCAGTGAAGAAGAAGATCCAGGAGCTTGAAGAAGGCCATGCTTTCATGAAGCAGGAAATGTCAAAGCTCAAGCTTTCTGATGGAAGAGAACAACAACAACAACAACAACATCATCATCGTCAACAACATCAAAGGTCTCAGTCTGTGTCTCCTCAACGTTCTAGATTGGGTTCGTGGAACAAAGGTTCTTGTTCCTTTAAGCATTCATCGCCGCTTCGAAAGGAAACTCGTGCTTCTGCACTTGTCAATTTTACTGAGAAACATTATCTTAATATTTTGCACTCTTTGGGACATTCTCTGCATATTTTGGATCTTAACTCTCGTATCATTTACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCGGCGGAGGAAGTTTTGGGACAGGATGGGATTGATTTGCTAGTGGATCCTAGGGACTGGGGATTAGCTTGTGATACAGTGAACTGTGTCATGAAGGGAGAGAGATGGAGCGGTCAATTCCTAGTCAAGAACAAGAAAGGAGAAAGGTTTTTAGCTGTAACATCCAATACTCCTTTTTATGATGATGGAAGCTTAGTTGGGATTATCTGTGTGTCGAGTGATTCACGGCCGTTTCTTGAAATGAGAGCTCCGTTTTATGGTGTTAAGAATGCTGAACCGGATTATGTTTCTGCTCGTCCTAAAAGCTTTGACTCTCAGCAGCCACTTCAAACTGCTATAGCATCTAAAATTTCTAATTTGGCATCAAAGGTGAGTAACAAAGTTAAGTCGAGAATCTGGACGGGAGACAATAATGTAGATCATGAAGGTGGGAATGGGGAAAGTCGTAATTCCGAACATGGTTTCTCAGAACACAGAGAAGATGCTAATTCAAGCGGAGCTAGCACTCCTAGAGGTGATTTGCCACAGTCCCCTGTTGGTATATTTTATCGTGTTGAAGAGAAGTTTGAAGAAAAAACTTTGAGAGACTCTGGTGATGAGAGTGAAGGAAAACTGGTTCACAAATTTTTACCTACTAAGGCTGAAGCCTGGGTTCAAAAGAAAACATTATCTTGGCCATGGAGAACAAATGATCGAGAAGAGCCAGAGGCAAGGAATGTGCGTGCTGCTGAGCCATGGAGGCAGAATGATCAAGAAAATGAGTCAGTTAGTCAGAAGAATCTTTATTCTGGCTTGAAGCAGGAAAGTCAGGCCAGTGAAAGTAATCGCCTTACTAACAATGAGGCTTCAATACCCCGTTCTGCCTCCTTTAATGTTATCAGCACAAGTAGTGCTAGCAGCTCTGGGAGTGCTGGCAGTGGTGTGGCCAATAGCAAAATGGATGTAGACTCTGACTGTTTGGATTATGAAATTTTGTGGGAGGATTTAACAATTCGAGAACAAATTGGACAAGGTTGTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATGTTATACTATCCTTCAGACAAGAGGTATCTGTCATGAAAAGACTTAGGCACCCAAATATTCTTCTCTTTATGGGAGCAGTAACTTCACCTCAACGTCTTTGCATTGTGACGGAGTTTCTCCCACGCGGCAGCTTGTGTCGCTTGTTGCACAAAACTACACCCAAACTTGACTGGAGACGACGAGTACATATGGCCTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTATAACCCGCCTATCATACATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACCAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCGTCAGATGAGAAGTCTGATGTATATAGCTTTGGGGTGATATTATGGGAACTTGCGACAGAAAAGATTCCCTGGGATACTCTCAACTCAATGCAGGTAATTGGAGCTGTAGGATTCATGAATCAGCGTCCAGAAATTCCAAAAGATGTTGATCCTGAGTGGGCTTCTTTAATTGAGATCTGTTGGCACAGTGATCCAACTTGCCGACCAACTTTCCCAGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAGACGGTATGTCATTGAGTTCCAAGCAGCCCGATCTGCTGGTGGCGAAAGCATCCAAAGAAAAGAGTCCTAG 2220 0.4261 MTGTEERDEAVKKKIQELEEGHAFMKQEMSKLKLSDGREQQQQQQHHHRQQHQRSQSVSPQRSRLGSWNKGSCSFKHSSPLRKETRASALVNFTEKHYLNILHSLGHSLHILDLNSRIIYWNRSAENLYGYAAEEVLGQDGIDLLVDPRDWGLACDTVNCVMKGERWSGQFLVKNKKGERFLAVTSNTPFYDDGSLVGIICVSSDSRPFLEMRAPFYGVKNAEPDYVSARPKSFDSQQPLQTAIASKISNLASKVSNKVKSRIWTGDNNVDHEGGNGESRNSEHGFSEHREDANSSGASTPRGDLPQSPVGIFYRVEEKFEEKTLRDSGDESEGKLVHKFLPTKAEAWVQKKTLSWPWRTNDREEPEARNVRAAEPWRQNDQENESVSQKNLYSGLKQESQASESNRLTNNEASIPRSASFNVISTSSASSSGSAGSGVANSKMDVDSDCLDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHKTTPKLDWRRRVHMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNSMQVIGAVGFMNQRPEIPKDVDPEWASLIEICWHSDPTCRPTFPELLERLRELQRRYVIEFQAARSAGGESIQRKES 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01022 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Vivi1g01022 739 PRINTS Tyrosine kinase catalytic domain signature 639 661 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 PRINTS Tyrosine kinase catalytic domain signature 683 705 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 PRINTS Tyrosine kinase catalytic domain signature 573 591 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 PRINTS Tyrosine kinase catalytic domain signature 620 630 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 PRINTS Tyrosine kinase catalytic domain signature 534 547 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 FunFam PAS domain-containing protein tyrosine kinase family protein 538 729 - -
Vivi1g01022 739 FunFam PAS domain-containing protein tyrosine kinase 453 537 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 359 412 - -
Vivi1g01022 739 ProSiteProfiles PAS repeat profile. 94 165 IPR000014 -
Vivi1g01022 739 Gene3D PAS domain 107 208 - -
Vivi1g01022 739 SUPERFAMILY PYP-like sensor domain (PAS domain) 93 205 IPR035965 -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 1 46 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 359 379 - -
Vivi1g01022 739 SMART serkin_6 460 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01022 739 Gene3D Transferase(Phosphotransferase) domain 1 539 724 - -
Vivi1g01022 739 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 105 717 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 265 309 - -
Vivi1g01022 739 Pfam Protein tyrosine and serine/threonine kinase 460 712 IPR001245 GO:0004672|GO:0006468
Vivi1g01022 739 MobiDBLite consensus disorder prediction 273 291 - -
Vivi1g01022 739 NCBIfam PAS domain S-box protein 95 205 IPR000014 -
Vivi1g01022 739 Pfam PAS fold 97 203 IPR013767 GO:0006355
Vivi1g01022 739 SUPERFAMILY Protein kinase-like (PK-like) 450 712 IPR011009 -
Vivi1g01022 739 CDD STKc_MAP3K-like 466 712 - -
Vivi1g01022 739 Coils Coil 15 35 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 380 412 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 54 76 - -
Vivi1g01022 739 MobiDBLite consensus disorder prediction 1 80 - -
Vivi1g01022 739 Gene3D Phosphorylase Kinase; domain 1 453 537 - -
Vivi1g01022 739 ProSiteProfiles Protein kinase domain profile. 460 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01022 739 SMART pas_2 96 163 IPR000014 -
Vivi1g01022 739 CDD PAS 111 205 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01022 Vivi-Chr1 21791987 21796951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01022 9 729 MAP Kinase Kinase Kinase AT3G06620 57.717 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi1g01022 PK_Tyr_Ser-Thr 3.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01022 - - gmx:100800867 1068.14