Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g01008 | ATGGAGCCAGGAATTCCCCCTTCAACTCCCGATTCGCCTACATCTCCATCCATCGGTTTCAACACCGATCAACTTCCTCACACTCACACCAGTCGCGCCTCCGACGACGAAGCTTCCGTCGATCCCGACATCATTCGCGACGAGCCTGAGCCAGAGGAAGATGAAGACGGAGAAGATCTCTACAACGATAACTTTCTCGAGGATTATCGGAGAATGGATGAAGCTGACCAGTTCGAATCTGTTGGATTGGATGATTCTGTTGAAGACGAGAGAGATTTTGATCAGATCATGGAGGATCGTAGGGCTGCTGAAGTTGAGCTTGACACTCGCGATGGCCGTACTTCCAATAGGACTAAACTTCCTCAGCTTCTTCACGACCAGGATACTGATGATGACAGTTATAGGCCTTCTAAAAGGGCCAGAGCTGATCACAGGTCATCTATACCACCAAGTGATGATGATCTTGATGGGATGAATAGTTCACCTGGAAGGTCACAACGAGGACAACACTCAAGGGAGGATAATCCAACCACTGATCAAAATGAGGATGATCAGTATGAGGATGATTTTGATGATGAAGCTGGGTATGAGATGTACCGAGTTCAAGGAACCCTTAGAGAATGGGTTACAAGAGATGAAGTCCGCCGTTTCATAGCCAGGAAATTCAAGGATTTCTTACTCACTTATGTCAATCCGAAGAATGAACATGGAGATTTTGAGTATGTGCGTCTGATTAATGAAATGGTGTCGGCTAACAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTCCATCCCAACATCGCCATTTGGCTGGCTGATGCACCTCATTCTGTTCTAGAAGTGATGGAGGATGTTGCTAAAAGTGTTGTCTTTCAGTTACATCCAAATTACAAACATATACACCAAAAGATTTATGTTCGCATTACCAACTTACCAGTTTATGATCAGATCCGAAATATTAGACAGATTCATTTGAATACAATGATCCGAATTGGGGGAGTTGTAACTAGGCGTTCTGGAGTTTTCCCCCAGTTGCAACAGGTGAAGTATGACTGTAGCAAATGTGGGGCAATTTTGGGGCCATTTTTTCAGAATTCCTATTCGGAGGTGAAAGTTGGTTCCTGTCCTGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAACAGACAATTTACAGGAATTTTCAAAAGCTCACTCTTCAAGAGAGTCCAGGCATAGTTCCTGCTGGGCGACTGCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGACCTGGAGAAGAGATTGAGGTCACGGGTGTTTATACTAATAACTTTGACTTGTCCCTTAACACAAAGAATGGTTTTCCTGTGTTTTCCACTGTTGTTGAGGCAAATTATGTTACAAAGAAGCAGGATCTCTTTTCTGCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCTCGAATTGGAGAAAGGATTGTCAAGTCTATTGCTCCATCAATTTATGGTCATGATGATATAAAAACTGGAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAGAATGTTGAAGGGAAGCATCGTCTGCGAGGAGACATTAATGTTCTTCTTCTCGGCGATCCAGGAACAGCAAAATCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACCACTGGTAAAGGAGCTTCTGCTGTGGGTCTCACTGCAGCAGTTCACAAGGATCCTGTCACGAGGGAATGGACCCTTGAAGGGGGAGCTCTTGTTCTAGCTGACAGAGGGATTTGTCTCATTGATGAATTTGACAAGATGAATGACCAGGATCGAGTAAGTATTCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCTGGAATTGTCACATCTCTGCAGGCACGCTGTTCTGTCATTGCTGCTGCAAATCCAATTGGAGGAAGATATGATTCCTCAAAATTGTTTACACAGAATGTTGAATTGACAGATCCTATTATCTCTCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTTGATCCAGTCACTGATGAAATGCTTGCAAAGTTTGTTGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACAATGATGATAAGTCTGTTAGTGAGTCCCAGGATGCATCTGGCATGCCAATTGACCCAGAGATACTCCCTCAAGATCTGTTGAAGAAGTACATTACATATGCCAAGTTGAATGTTTTCCCAAGGTTTAATGATGCTGATTTGGATAAACTTACTCATGTGTATGCAGAACTCCGAAGGGAATCATCGCATGGTCAAGGAGTCCCCATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCAAGAATGCATCTCAGACAGCATGTCACACCAGAAGATGTGGACATGGCAATCCGTGTTCTACTTGATTCGTTCATTTCAACCCAGAAGTTTGGGGTGCAGAAAGCACTGCAAAAGAGCTTTAGAAAGTATATCACTTTCAAGAAGGACTATAATGATATGCTCGTTTATATTCTCCTAGACCTTGTAAAGAGTGCTATTCAATTTGAAGAAATTGTTGCTGGGTCCACTTCTAGTCTGACGCATGTAGAAGTCAAAGTAGATGATCTCTTCATGAAGGCTCAAGAGCATGATATATATGATCTGAAGCCGTTCTTCAACAGCAACCAGTTTTCAAGGGCCAATTATGTATTAGATGAAGAGCGAGCAGTGATCATACATCACCTCAGGTGA | 2799 | 0.4269 | MEPGIPPSTPDSPTSPSIGFNTDQLPHTHTSRASDDEASVDPDIIRDEPEPEEDEDGEDLYNDNFLEDYRRMDEADQFESVGLDDSVEDERDFDQIMEDRRAAEVELDTRDGRTSNRTKLPQLLHDQDTDDDSYRPSKRARADHRSSIPPSDDDLDGMNSSPGRSQRGQHSREDNPTTDQNEDDQYEDDFDDEAGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPHSVLEVMEDVAKSVVFQLHPNYKHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIVKSIAPSIYGHDDIKTGIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANNDDKSVSESQDASGMPIDPEILPQDLLKKYITYAKLNVFPRFNDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTPEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNDMLVYILLDLVKSAIQFEEIVAGSTSSLTHVEVKVDDLFMKAQEHDIYDLKPFFNSNQFSRANYVLDEERAVIIHHLR | 932 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g01008 | 932 | SUPERFAMILY | Nucleic acid-binding proteins | 221 | 468 | IPR012340 | - | |
| Vivi1g01008 | 932 | Gene3D | - | 347 | 397 | - | - | |
| Vivi1g01008 | 932 | ProSitePatterns | MCM family signature. | 608 | 616 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 329 | 346 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 463 | 474 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 387 | 401 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 448 | 459 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 352 | 364 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | Gene3D | - | 212 | 316 | - | - | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
| Vivi1g01008 | 932 | FunFam | DNA helicase | 347 | 397 | - | - | |
| Vivi1g01008 | 932 | ProSiteProfiles | MCM family domain profile. | 499 | 705 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 123 | 151 | - | - | |
| Vivi1g01008 | 932 | Pfam | Mini-chromosome maintenance protein 2 | 35 | 193 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vivi1g01008 | 932 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 509 | 831 | IPR027417 | - | |
| Vivi1g01008 | 932 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 205 | 873 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | SMART | mcm | 316 | 828 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 540 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 600 | 614 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 652 | 664 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 679 | 687 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 628 | 641 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | Pfam | MCM P-loop domain | 487 | 709 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 63 | 78 | - | - | |
| Vivi1g01008 | 932 | FunFam | DNA helicase | 479 | 850 | - | - | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
| Vivi1g01008 | 932 | Pfam | MCM AAA-lid domain | 743 | 827 | IPR041562 | - | |
| Vivi1g01008 | 932 | CDD | MCM2 | 502 | 826 | - | - | |
| Vivi1g01008 | 932 | Gene3D | - | 479 | 850 | IPR027417 | - | |
| Vivi1g01008 | 932 | FunFam | DNA helicase | 212 | 316 | - | - | |
| Vivi1g01008 | 932 | Gene3D | - | 320 | 445 | IPR012340 | - | |
| Vivi1g01008 | 932 | Pfam | MCM OB domain | 319 | 446 | IPR033762 | - | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 712 | 736 | - | - | |
| Vivi1g01008 | 932 | Pfam | MCM N-terminal domain | 220 | 313 | IPR027925 | - | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 1 | 188 | - | - | |
| Vivi1g01008 | 932 | MobiDBLite | consensus disorder prediction | 93 | 115 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g01008 | Vivi-Chr1 | 21464054 | 21469449 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g01008 | 19 | 927 | Core DNA Replication Machinery Family | AT1G44900 | 75.734 | 0.0 | 1365 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g01008 | K02540 | - | gmx:100799441 | 1622.83 |