Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00999 ATGGTTCCTTGGTTAGTTTCTCTATGCTCAAAGCCTTTGGCATTATTTTGCACCCTCGAAATCAGATTGGCACTCGAGAAATCCTTTGGTGTCCGCCGGCTCCGGGTTGGATTAAATGCAACATTGACGGTGTTGCCTATGGTTCCCCTATGTGTTGCTGCTTGTGGTGGAATCTACCGTGATGATAAGGCTGTCAACATGCTCAGTTTCAGTGTTTTTTTGAATGAAGGATCTCCTATTTTTGCAGAATTCATGGCAGCTATTATAGCTATTGAAAAGGCTAAGCAATTAAATTGGAATAAGCTATGGATTGAAACGGATTGTTTACTTTTGGCTTTGCACTTAAGAGGAAAACACCTTGCAGAAATCTGTAAGGCTGAGTATCCACTATTCGGGAAGTACTGTTTATGGATACTAGCTGAGCTTGTTGTAATCGCATCAGACATACCTGAAGTGATTGGGACAGCATTTGCTCTTAACATACTATTTCATATTCCAGTATGGGGAGGAGTTTTGTTGACGGGATGTAGCACGCTCTTGTTTTTTGGCCTTCAAAGATTTGGAGTAAGGAAATTGGAACTTCTGATATCAGTTTTAGTATTTGTAATAGCTGCTTGTTTCTTCGGAGAAATGAAATACGTAAAACCCCCTGCATCTGGTGTAGTCGAAGGAGTATTTGTCCCTAAACTCAATGGAAATGGCGTTGTAGCCGACGCTATTGCCCTCTTAGGAGCTCTAATCATGCCTCACAATATTTTCCTCCACTCTGCTCTAGTGTTATCAAGAAAAATACTTGGTTCTGAGTGTGGTATCAATGATGCATGCAGATACTTTCTCATTGAAAGTGGTTTTGCTTTGTTTGTCGCATTTCTAATTAACATTGCAGTGATTTCCGTGTCTGCCACTGTTTGTACTGCCAAAGACATTACTGCTGAAAATGTTAAAAGTTGCAGTGATCTTACCCTTAACTCAGCTTCTTTTCTTCTTAAGAATGTATTGGGACGTTCCAGCTCAATCATTTATGCAATAGCCTTGCTAGCTTATGGACAAAGTTCTTCCATAACTGGGACATATGAAGGAAAAAAAAAGTTATTTCGTAGTTGTATGCATTCCATCATAATTTTATAA 1128 0.3954 MVPWLVSLCSKPLALFCTLEIRLALEKSFGVRRLRVGLNATLTVLPMVPLCVAACGGIYRDDKAVNMLSFSVFLNEGSPIFAEFMAAIIAIEKAKQLNWNKLWIETDCLLLALHLRGKHLAEICKAEYPLFGKYCLWILAELVVIASDIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFFGLQRFGVRKLELLISVLVFVIAACFFGEMKYVKPPASGVVEGVFVPKLNGNGVVADAIALLGALIMPHNIFLHSALVLSRKILGSECGINDACRYFLIESGFALFVAFLINIAVISVSATVCTAKDITAENVKSCSDLTLNSASFLLKNVLGRSSSIIYAIALLAYGQSSSITGTYEGKKKLFRSCMHSIIIL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00999 375 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 PRINTS Natural resistance-associated macrophage protein signature 189 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 PRINTS Natural resistance-associated macrophage protein signature 349 368 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 PRINTS Natural resistance-associated macrophage protein signature 164 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 CDD RNase_H_like 53 111 IPR044730 -
Vivi1g00999 375 Pfam Natural resistance-associated macrophage protein 116 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 Pfam Reverse transcriptase-like 53 118 IPR002156 GO:0003676|GO:0004523
Vivi1g00999 375 Gene3D - 49 143 IPR036397 GO:0003676
Vivi1g00999 375 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 116 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g00999 375 SUPERFAMILY Ribonuclease H-like 53 130 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00999 Vivi-Chr1 21270702 21272071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00999 91 361 Inorganic Solute Cotransporters AT1G15960 58.363 7.89e-107 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00999 K21398 - gmx:100787785 402.905