Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00996 ATGAATGATGGAAGTTGCATAACTGATTTCCATTTCTCACCTGCTTTACCATCATGCAGCGTCTTTAACATGCCACCACCACCATCACCACTGTCTGATCCTAATCTAAGTGATGCTTCTTTTTCTAGTTACATGGATGATTTCAACGCTTTTTATTGGTTCTCAGACTTCAACTTTGAAACCGGCACGCCAGAATCACTACCTGCTGCAACCCAAACTGACTTGCAGCAGCCTGTCTCGGACTCGTCTTCGATTCCTTCGTCCTACAATGAGGCTGGTGCAGTTGCTGTCAAACCGGTTGGTGCAGTTGCTGTCAAACCGGTTGTTGCCGCAGCTGAACCTGAAGATAGACTGCAACTTGTTGAAGGAAAGGAAGCTGAGGATCACGGTGGAGATCATGGAATCGAAGCGGTGGAGAATCCAAATGATCAAAATCAGGCGAAGAAAACGGTGAAACCAAAGAAGAAGGACAAGCAAAAGCAAAGACCTACAAAAGTTAATGTCAAAACAGAAACTGAAGTTGATCACTTGGATGATGGTTTCCAATGGCGCAAGTATGGCCAGAAACGTGTCAAGAAAAGCCCTTTTTCTAGGAGCTATTACCGTTGCACAGCTCCAGGTTGTGACGCAAAGAAGCGCATAGAGCGTTATGCGCCTGAGCCTTCCATGCTGCTAACCAGTTATGAAGGCAACCACACCCACCTAGCTCCGAAGGTGACTCGTCCTGCAGGCCTCGAAATCATGCATGATGCTAATGATGCTATTGCTGCTGGTGTCCAGAAAATCCACGATAACCTGATCAAAACTAATTGTGTTGGTGTTGCTGGAAATCAATTTGAAATGTCTCAGTCCCAACCACAACAAATTCAGAATCAGAATCAGAATGTTATTCTTCAGCAAGCTGCATTGCCAACTTTGCCCTACAATAATGATTATAATAACTCCTTCAACATTGCTTCAGCAATGAATGTTAACTCTGCTGACAACTTTCCACCTTTGAATGTTGTTAACTCTTCTGTTGCTCACAACTCTCCACCTTTGAATGTTGTTAACCCCACAAAAAATTCTATCAACTCTTCGGTAATATTTGGTGAATTCCTTCAAAATCTAGGTGGATGCAATTTTTCAATATCGACAGAAAATTTGATGAGCAACGATGGACTTCTTCAGGACATGATCAAGCCAATGGAGATGAAAGGAGCTTCGGATGGAGCTGGACTGGAGCAGGAGCAGGAGCAGTAG 1242 0.4388 MNDGSCITDFHFSPALPSCSVFNMPPPPSPLSDPNLSDASFSSYMDDFNAFYWFSDFNFETGTPESLPAATQTDLQQPVSDSSSIPSSYNEAGAVAVKPVGAVAVKPVVAAAEPEDRLQLVEGKEAEDHGGDHGIEAVENPNDQNQAKKTVKPKKKDKQKQRPTKVNVKTETEVDHLDDGFQWRKYGQKRVKKSPFSRSYYRCTAPGCDAKKRIERYAPEPSMLLTSYEGNHTHLAPKVTRPAGLEIMHDANDAIAAGVQKIHDNLIKTNCVGVAGNQFEMSQSQPQQIQNQNQNVILQQAALPTLPYNNDYNNSFNIASAMNVNSADNFPPLNVVNSSVAHNSPPLNVVNPTKNSINSSVIFGEFLQNLGGCNFSISTENLMSNDGLLQDMIKPMEMKGASDGAGLEQEQEQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00996 413 MobiDBLite consensus disorder prediction 125 168 - -
Vivi1g00996 413 Gene3D WRKY domain 161 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00996 413 MobiDBLite consensus disorder prediction 65 86 - -
Vivi1g00996 413 Coils Coil 406 413 - -
Vivi1g00996 413 ProSiteProfiles WRKY domain profile. 172 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00996 413 SMART WRKY_cls 177 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00996 413 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 292 IPR044810 GO:0003700
Vivi1g00996 413 SUPERFAMILY WRKY DNA-binding domain 170 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00996 413 Pfam WRKY DNA -binding domain 178 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00996 Vivi-Chr1 21187855 21189702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00996 144 242 WRKY Transcription Factor Family AT2G47260 53.535 2.33e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g00996 WRKY 7.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00996 - - vvo:131602302 736.102