Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00991 ATGAACTACAACCGTCGAAGTCCCGGCGGTTTTCGTTCCGTCCCCGCCCCTCCCCAGCGTTGGTCTCCGGGTAGGGTTGGGGCATTCCGTCCACCGGGTGCTGGAGAGGGGTTCAGGCCGGTGGGAGGTGAAGGTGCTGGGGATTTTGGATTTAATAATCACCAGCAGTTGCCGATGTCTGGGCAGAAACGAGGGTTTCCTTTCTCTGGACGTGGAGCTTTGCCGGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCTCGAACAGCAACTGAGGAAGATATTCGTCCTTTATTTGAGGAACATGGGAATGTGATTGAGGTCGCCCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTTATAAAATATGCTACTTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAATATACTCTGCCCGGAGGTCTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAATAAACAGGCTCTCGTAGAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATATTCTCACAGAGATATGGCACTGGCAGCTATCAATGGACTTAATGGGATATATACAATGAGAGGTTGTGATCAACCGCTAATTGTTCGGTTTGCTGATCCTAAGAGACCACGCCAAGGAGATTCCAGGGGTCCTGCTCTTGGAGCTGCAGGATTTGGTCCTAGATTGGATGCACCTGGCACTAGATTTCCATCAAATAATTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAACCCGTCCACCAAATACTGGTACATCCTTCAATGCTGGTTTTCACGGCATGGGGCCTCCATTGATGCCAAGATCTGGCGACATGACATTGCCTCTAAGTGCAAGTGGTCCTATGACTGGCATAGGAGCCTCCATAGATGTCCGTTTTCAAGCTCCATCTCCGTCAGCAATGCCACAACAGAATTTCAATCAGCCTCGACCGCAAATTCCACCGGTCAATCAACCAATGCCTCCACCACAGAAACCTATTCAATCATCTCAGGAGTTTCCGCCTTCACACCAGTTATATCCTCAAGCTCCGAGGCCCTATCCACAAACATCGACACTTCCATCCCTCAGGCAACATGGTCAGCCACAACCTCTGTCTGCTGGTCCGCAGGGACTGGGCATTAATGCACAGTTTTCAGTTCCTCAACCTCAAGCTCAGCAGAGTGTTTTGTCTGCTACGTTTCCTCAGACCTCCCTTGATACTAGCGTCCAATCTAACTCAGCATTGACTACCCCAAGTAGACAGCAAATTCCTCCCTCTATGCAGCAGCAGCAGCAGCCCCTTCAACCTCTTCAATCACTTCAGCAATCCCCTTCTCAGTTAGCCCAGTTGGCGTCACAGCAAACACAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATCCAGCCATCCAGTCAAGCATTGACATTGCAGCATCATTCAGAAGCTACTAAAACACAGTCTCAATGGGGCGGGCCTGTATCACATGCAGCTACAGGCACTCATGTGGCTGCACCTGCTGCAGCTGCTCCTTCATCAACAGCTGCTACTTCTTCTGTACAAGCATTAAGCCAGAATACAACTGTTGCAAAATGTAATTGGACAGAGCATCTTTCTCCCGAGGGCTTCAAATACTACTACAATAGTGTGACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATTGTTTGAACAGCAAAAGCAACAGCACAGCCAGTCTGTTCAGCAGTCTCAAATTCGGTCACAGTCTTCAATACCACCCACCCAACAAATTGTACAAAACCAACAGGTTCAGCCACAAAGTCATTTCCGAGAACAAGCTCTCCACCATCAACAAATACAGCAACCTTCCTCTGCATTTGGAGTTACAGGTCATCAAAATGTTCAGGAACCTGGTTATAAACAGTTACAGACATCATTTGTTTCTGCTGGTGCTCCTGGACGATATTCACAGGGTATTAATACTACGCAAGAGGTGATGTGGAAAAACAGACCTGCAGGAGTTTGA 2208 0.4792 MNYNRRSPGGFRSVPAPPQRWSPGRVGAFRPPGAGEGFRPVGGEGAGDFGFNNHQQLPMSGQKRGFPFSGRGALPDHFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQYTLPGGLGPIQVRYADGERERLGAVEYKLFVGSLNKQALVEEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGAAGFGPRLDAPGTRFPSNNSDPMGDRMPPPNAWRPTRPPNTGTSFNAGFHGMGPPLMPRSGDMTLPLSASGPMTGIGASIDVRFQAPSPSAMPQQNFNQPRPQIPPVNQPMPPPQKPIQSSQEFPPSHQLYPQAPRPYPQTSTLPSLRQHGQPQPLSAGPQGLGINAQFSVPQPQAQQSVLSATFPQTSLDTSVQSNSALTTPSRQQIPPSMQQQQQPLQPLQSLQQSPSQLAQLASQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQALTLQHHSEATKTQSQWGGPVSHAATGTHVAAPAAAAPSSTAATSSVQALSQNTTVAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQHSQSVQQSQIRSQSSIPPTQQIVQNQQVQPQSHFREQALHHQQIQQPSSAFGVTGHQNVQEPGYKQLQTSFVSAGAPGRYSQGINTTQEVMWKNRPAGV 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00991 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Vivi1g00991 735 SUPERFAMILY WW domain 598 630 IPR036020 GO:0005515
Vivi1g00991 735 SMART ww_5 594 626 IPR001202 GO:0005515
Vivi1g00991 735 SMART rrm1_1 85 161 IPR000504 GO:0003723
Vivi1g00991 735 SMART rrm1_1 176 251 IPR000504 GO:0003723
Vivi1g00991 735 PANTHER RNA BINDING PROTEIN 59 521 - -
Vivi1g00991 735 FunFam flowering time control protein FCA isoform X2 78 170 - -
Vivi1g00991 735 ProSiteProfiles WW/rsp5/WWP domain profile. 599 626 IPR001202 GO:0005515
Vivi1g00991 735 MobiDBLite consensus disorder prediction 255 310 - -
Vivi1g00991 735 SUPERFAMILY RNA-binding domain, RBD 175 266 IPR035979 GO:0003676
Vivi1g00991 735 Gene3D - 592 642 - -
Vivi1g00991 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 255 IPR000504 GO:0003723
Vivi1g00991 735 MobiDBLite consensus disorder prediction 1 38 - -
Vivi1g00991 735 MobiDBLite consensus disorder prediction 537 560 - -
Vivi1g00991 735 CDD WW 596 626 IPR001202 GO:0005515
Vivi1g00991 735 MobiDBLite consensus disorder prediction 633 681 - -
Vivi1g00991 735 Gene3D - 170 263 IPR012677 -
Vivi1g00991 735 ProSitePatterns WW/rsp5/WWP domain signature. 599 624 IPR001202 GO:0005515
Vivi1g00991 735 FunFam Flowering time control protein FCA 171 261 - -
Vivi1g00991 735 MobiDBLite consensus disorder prediction 460 499 - -
Vivi1g00991 735 MobiDBLite consensus disorder prediction 537 562 - -
Vivi1g00991 735 MobiDBLite consensus disorder prediction 368 389 - -
Vivi1g00991 735 SUPERFAMILY RNA-binding domain, RBD 68 169 IPR035979 GO:0003676
Vivi1g00991 735 MobiDBLite consensus disorder prediction 355 436 - -
Vivi1g00991 735 Gene3D - 80 169 IPR012677 -
Vivi1g00991 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 243 IPR000504 GO:0003723
Vivi1g00991 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 149 IPR000504 GO:0003723
Vivi1g00991 735 MobiDBLite consensus disorder prediction 390 436 - -
Vivi1g00991 735 Pfam WW domain 598 624 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00991 Vivi-Chr1 21103109 21113625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00991 72 261 Eukaryotic Initiation Factors Gene Family AT1G71770 27.184 7.00e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00991 - - tpra:123920645 1048.5