Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00956 ATGAGTGTTTCTCTTTCTCTCCTCAAATTCCTATGTTTCTTTCTTGTAACTATCACTTCTTCATTCTTCACCAAACCACCTCAAATAAATGCTGAAACCTATGAATCTGATAGAATAACTGATTTACCAGAACAACCTTCAACACCATCAATCTCACACTTTTCAGGTTACATCAATGTCAATGAAGATCATGGAAGAGCACTTTTCTATTGGTTCTTTGAAGCTCAATCTCAACCCTCTAATAAGCCTCTCCTTCTTTGGCTCAATGGAGGACCTGGATGCTCCTCGATTGGATACGGTGCTGCTGTTGAGATAGGACCTCTTTTAGTCGACAAAAATGGCGAAGGACTATTATTCAACCCGTACTCTTGGAATCAAGAAGCAAATTTGTTATTTGTGGAATCTCCTGTTGGAGTTGGATTTTCTTACACAAACACTTCTTCTGATCTCACAATTTTAGAGGATCATTTTGTTGCTGAAGATACCTACAATTTCTTGGTGAATTGGCTACAAAAATTTCCACAGTATAATTCCAAGGACTTTTTCATCGCCGGAGAAAGCTATGCAGGCCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATAGAAACAAAGACAGAAACACATACTCCTTTATAAATCTTAAAGGTTTCATTGTAGGGAATCCAGAAACTGAAAATTACTATGACTCTAAAGGCCTTCTAGAATTTGCATGGAGTCATGCAGTTATATCAGATGACCAATATGAGAAAGCAAAACAAGTTTGTGATTTCAAACAATCTCAATGGTCTCCTGAATGCAATCAGGCCATGAATGAACTCTATAATGATTACTCAGAAATTGACATATACAACATTTACGCACCAGCTTGTCGATTAAATACTACATCCTCAGTAACAAGTAATGTCGATTATAGGTTCAAGAGAATGCGAATTTTCGGAGGCTATGATCCTTGTTATTCCTCGTATGCAGAAGAATATTTCAATAGAGTAGATGTTCAATCATCTTTACTCTCAAATACTAAAACAGAAAACAGTCACATAACATGGAAAGTTTGCAATGCTTCCATATTGAGAACATATAACTTCTCTGTTTTTTCTGTGCTACCAATCTACACCAAACTCATTAATGGTGGCCTTAAGATATGGATTTACAGTGGTGATGCAGATGGTAGAATTCCTGTGATGGGAACACGTTATTGTATTGAAGCTCTTGAGTTACCTCTAAAGTCTACTTGGAGGCCTTGGTACCATAACAATCAGGTTGGTGGAAGGATAGTGGAGTATGAAGGATTGACATATGTGACAGTAAGAGGAGCTGGACATTTAGTGCCTCTAAACAAGCCAACTGAGGCTCTATCTCTTATTCATTCTTTTCTCACTGGAGAACATCTCCCTACTACACGTTAA 1410 0.3759 MSVSLSLLKFLCFFLVTITSSFFTKPPQINAETYESDRITDLPEQPSTPSISHFSGYINVNEDHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAAVEIGPLLVDKNGEGLLFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDTYNFLVNWLQKFPQYNSKDFFIAGESYAGHYIPQLAELIFDRNKDRNTYSFINLKGFIVGNPETENYYDSKGLLEFAWSHAVISDDQYEKAKQVCDFKQSQWSPECNQAMNELYNDYSEIDIYNIYAPACRLNTTSSVTSNVDYRFKRMRIFGGYDPCYSSYAEEYFNRVDVQSSLLSNTKTENSHITWKVCNASILRTYNFSVFSVLPIYTKLINGGLKIWIYSGDADGRIPVMGTRYCIEALELPLKSTWRPWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPTEALSLIHSFLTGEHLPTTR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00956 469 Gene3D alpha/beta hydrolase 33 293 IPR029058 -
Vivi1g00956 469 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Vivi1g00956 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Vivi1g00956 469 Gene3D - 368 462 - -
Vivi1g00956 469 FunFam Carboxypeptidase 368 462 - -
Vivi1g00956 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 SUPERFAMILY alpha/beta-Hydrolases 39 465 IPR029058 -
Vivi1g00956 469 Pfam Serine carboxypeptidase 43 461 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 449 IPR001563 GO:0004185|GO:0006508
Vivi1g00956 469 Gene3D - 319 357 - -
Vivi1g00956 469 FunFam Carboxypeptidase 33 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00956 Vivi-Chr1 20115502 20118060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00956 350 465 Calmodulin-binding Proteins AT2G22960 33.333 1.08e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00956 K16297 - gmx:100792930 779.63