Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00951 ATGGATGTAAAAGGAAGAAACAACAACAACAACAACGTTGTTATGAGTAGTGAAGATGATGAGATGGACCTTAGAAGAGGTCCATGGACGGTGGATGAGGATCTAACCCTCATGAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTAGCAAACTTAGCAGGTCTTAAACGAACGGGCAAGAGTTGTCGATTGAGGTGGCTAAACTATCTTCGTCCTGATGTTAGACGAGGAAACATCACACTTGAAGAGCAACTAATGATTCTTGAGCTTCATACTCGTTGGGGTAATCGATGGTCAAAAATAGCACAATATTTACCTGGAAGAACAGACAACGAAATAAAGAATTATTGGAGAACTCGTGTGCAAAAGCTAGCCAAACAACTCAAATGCGACGTGAATAGCAAGCAATTCAAAGACACCATGCGTTATCTTTGGATGCCAAGACTAGTAGAGCGCATTCAGGCCGCATCAGCCGCCACTTCCACCACCACCAAGGCCGTCGTCAACAATACTTCATCCAACTACATCAACAATAATAATGGCGTAAAAGCTACAATGGGTTCAACTCCAACAATTACTTCTATAAACAATGAATTTGTGAGTTCACAACCACATATGACACAAGGTTATACCCTAGAGAACAGTTACACAACCACATCTTCAGATTCATTTGAGAATAATATCTCAACAATATCAAATTTGGGTGATAATAATAATTATTGTTACACAAGTTTTGATAATAAGGATAACCCTAATTTAGATTATTATCAACCTTCTCATCAACCTAGCTTCTCAGATTGCATCACAAGCCCATCTGGATTATTCTCCTCTCAAGAAATAACTGATTTCCAATTCATGGAGCCAAACACACCATGGATACAAAATGAGGACTCATCAAACATTTTTTGGAATGATGAAACCATCTTGTTTTTGGAGCAACAACTCATGAATGATACCATGTAA 972 0.3879 MDVKGRNNNNNNVVMSSEDDEMDLRRGPWTVDEDLTLMNYIATHGEGRWNTLANLAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAASAATSTTTKAVVNNTSSNYINNNNGVKATMGSTPTITSINNEFVSSQPHMTQGYTLENSYTTTSSDSFENNISTISNLGDNNNYCYTSFDNKDNPNLDYYQPSHQPSFSDCITSPSGLFSSQEITDFQFMEPNTPWIQNEDSSNIFWNDETILFLEQQLMNDTM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00951 323 FunFam MYB transcription factor 83 146 - -
Vivi1g00951 323 CDD SANT 83 122 IPR001005 -
Vivi1g00951 323 Gene3D - 83 146 - -
Vivi1g00951 323 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g00951 323 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Vivi1g00951 323 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Vivi1g00951 323 CDD SANT 28 73 IPR001005 -
Vivi1g00951 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Vivi1g00951 323 FunFam Myb transcription factor 26 78 - -
Vivi1g00951 323 Gene3D - 23 79 - -
Vivi1g00951 323 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Vivi1g00951 323 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g00951 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Vivi1g00951 323 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vivi1g00951 323 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 205 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi1g00951 323 SMART sant 25 75 IPR001005 -
Vivi1g00951 323 SMART sant 78 126 IPR001005 -
Vivi1g00951 323 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00951 Vivi-Chr1 20028119 20030004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00951 1 157 MYB Transcription Factor Family AT3G06490 82.803 8.15e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g00951 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00951 K09422 - gmx:100791349 401.749