Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00948 ATGGTGCCAGAAGCTGAAATTATTTGTCAACCGAGTATTTCGATGTTGGATGTAAAGTATCACCTTTGCGTTGCGCAAGAACATAGCGTCAAGGTTGAGGTTTCACCAAAATCTCCTTCTCCTTCTATCCCAATCTTTGGCCATGCTGCGAGTTGCTCTGAGATCATGAAAGATTCTATGTTGGAGACCCCTGTGAAGATGTTTATCCCAAATGTGCGTTCTGGTAGCTATGCTGATATTGGACCACGGGGATCGATGGATGATGAACATATTCAGATAGATGATCTAGCTTGTCACCTTGGGTTTGTGTCCAAGTATCCGATACCGAGTGCGTTTTATGCGGTTTTTGATGGGCATGGAGGGCCTGAGGCGGCTGCATTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCTGATATGCTACAATCGTATGATACTGATGCGTTTTTTCTAGAGAAGTTGGAGGTATCTCATCGGAGAGCTTTTATACGGGCTGATCTTGCATTGGCTGATGAACAGAGTGTTAGTAGTTCATGTGGGACTACTGCACTGACTGCACTTGTACTTGGAAGGCATTTGCTTGTTGCGAATGCTGGTGACTGTCGAGCAGTACTTTGCAAGAGAGGTACAGCTGTTGAGATGTCTCAAGATCATAGACCGAGTTATTTACCAGAACGAAGGAGAGTGGAGGAGTTAGGCGGATTCATTGATGACGGATATCTCAATGGTTATCTCTCGGTAACTCGTGCCCTTGGGGATTGGGACTTGAAATTCCCCCTTGGTGCTGCGTCTCCTCTAATTGCTGAACCTGATGTTCAACTGGTTACATTGACAGAAGAGGACGAGTTCTTGATCATTGCGTGTGATGGAGTTTGGGATGTAATATCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGCGGATTAAGAAGGCACAACGACCCACAGCAAAGTGCTAGAGACCTAGTCAAGGAAGCATTGCGTCTAAATACATCAGATAATCTCACTGTGGTTGTTATATGTCTGTCAGCAGTTGAAAGCTTTGCTGAATCATGTCCTCCCCAAAGGCGAAGATTCAAAGCTTGCAGTATTTCTGAAGAGTCTCGTAATAGATTAAAGAGCTTAATAGAGGGAAATTGA 1143 0.4418 MVPEAEIICQPSISMLDVKYHLCVAQEHSVKVEVSPKSPSPSIPIFGHAASCSEIMKDSMLETPVKMFIPNVRSGSYADIGPRGSMDDEHIQIDDLACHLGFVSKYPIPSAFYAVFDGHGGPEAAAFVKRNAMRLFFEDADMLQSYDTDAFFLEKLEVSHRRAFIRADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCKRGTAVEMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEEDEFLIIACDGVWDVISSQVAVSLVRRGLRRHNDPQQSARDLVKEALRLNTSDNLTVVVICLSAVESFAESCPPQRRRFKACSISEESRNRLKSLIEGN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00948 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Vivi1g00948 380 Pfam Protein phosphatase 2C 83 335 IPR001932 -
Vivi1g00948 380 SMART PP2C_4 63 341 IPR001932 -
Vivi1g00948 380 SUPERFAMILY PP2C-like 65 344 IPR036457 -
Vivi1g00948 380 CDD PP2Cc 72 343 IPR001932 -
Vivi1g00948 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Vivi1g00948 380 Gene3D - 59 349 IPR036457 -
Vivi1g00948 380 PANTHER PROTEIN PHOSPHATASE 2C 62 341 IPR015655 GO:0004722|GO:0006470
Vivi1g00948 380 SMART PP2C_SIG_2 88 343 IPR001932 -
Vivi1g00948 380 FunFam Probable protein phosphatase 2C 22 57 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00948 Vivi-Chr1 19953090 19955240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00948 1 379 PP2C-type Phosphatase Gene Family AT1G48040 54.707 5.69e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00948 K14803 - gmx:100775577 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00948 1 19953090 19955240 Vivi1g00948 1 19953090 19955240 ECH