Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00923 ATGGGTTGCTTTGGCTTCTGCAAAGAGAATGATTCTTATACTACTGCTGACAGAGGAAACTTCATGCAAAACAATCCTACTGGGAACTCTAGTTATCATGGAAGACACACGGCAGTAACCATTCCTCGGCCTATAAATCTCCAACCGATTTCTGTGCCTTCCATTACAGTAGATGAATTGAAGTCTGTGACAGATAGTTTTGGTACGAAGTCTTTCCTTGGTGAAGGTGCGTACGGGAAAGTATATCGCGCCACGTTGAAAACGGGACGTGAAGTTGCGATTAAAAAGTTGGACTCCAGTAAACAGCCAGACCAAGAATTTCTTTCTCAGGTCTCCATCGTTTCAAGGCTAAAGCATGAAAACGTTGTCGAGCTTCTTACATACTGTGTTGACGGCCCTTTCCGTGCCCTTGCTTACGAGTATGCTCCAAATGGATCCCTTCATGACATTCTACATGGGCGCAAAGGGGTAAAGGGTGCAGAACCTGGTCAAGTTCTATCATGGGCTCAAAGGGTTAAAATCGCCGTTGGAGCAGCCAGAGGACTTGAATATCTTCATGAAAAGGCAGAAGTTCATATTGTCCATCGTTACATTAAATCTAGTAACATACTTCTATTCGAGGACGACGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATGCAGCAGCTCGTCTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGAAACCTCTCTTCAAAGAGTGATGTTTACAGTTTTGGAGTCATACTGTTGGAACTCTTAACTGGGCGTAAACCTGTCGATCATACACTGCCCCGAGGACAGCAAAGCCTTGTGACATGGGCAGCACCAAGGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCTTCCAAAGCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTTCAATATGAAGCTGAGTTTCGACCAAATATGAGCATCATTGTCAAAGCTTTACAGCCTCTAATGAATAATCCTCGTTCTTCGCAATCAAGGGAACCACGCAACGTGTAA 1086 0.4438 MGCFGFCKENDSYTTADRGNFMQNNPTGNSSYHGRHTAVTIPRPINLQPISVPSITVDELKSVTDSFGTKSFLGEGAYGKVYRATLKTGREVAIKKLDSSKQPDQEFLSQVSIVSRLKHENVVELLTYCVDGPFRALAYEYAPNGSLHDILHGRKGVKGAEPGQVLSWAQRVKIAVGAARGLEYLHEKAEVHIVHRYIKSSNILLFEDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGNLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWAAPRLSEDKVKQCVDVRLKGEYPSKAVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLMNNPRSSQSREPRNV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00923 361 CDD STKc_IRAK 73 346 - -
Vivi1g00923 361 FunFam pto-interacting protein 1 143 355 - -
Vivi1g00923 361 Gene3D Transferase(Phosphotransferase) domain 1 142 360 - -
Vivi1g00923 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 8 351 - -
Vivi1g00923 361 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00923 361 SUPERFAMILY Protein kinase-like (PK-like) 47 343 IPR011009 -
Vivi1g00923 361 Gene3D Phosphorylase Kinase; domain 1 33 141 - -
Vivi1g00923 361 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vivi1g00923 361 Pfam Protein tyrosine and serine/threonine kinase 71 343 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00923 Vivi-Chr1 19486232 19488650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00923 48 344 Receptor kinase-like Gene Family AT4G02010 49.502 8.12e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vivi1g00923 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00923 K13436 - gmx:547595 631.328