Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00908 ATGGCAATGGATATCAGTTTGGAAGGAGATATTGCGAGTATTCAATCAGTTGAAGATCATGAAAGCAAGAAAGATTCAGATAAGAGCAAGGCCAAAGACGAAACCACCAACACAGTACCATTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCGTTTATTGATGTTTGCGGGGACTATCGGTGCTATTGGGAATGGAATCTCTATACCCTTGATGATTTTAATATTTGGAAATTTGATCAATGCATTTGGAGATTCCACAAGCTCAAAAGTTGTTGATGAAGTCTCCAAGGTGTCTTTGAAATTTGTATACTTGGGAGCAGGCACCTTTGTTGCATCATTTTTGCAATTGGCTTGCTGGATGATCACCGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGGCAAGATGTGAGTTTCTTTGATAAAGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCAGGTGATACTGTTCTTATTAAAGATGCCATGGGAGAAAAGGTGGGACAGTTCATACAGTTTGTGTCAACTTTCATAGGAGGTTTTGTCATAGCATTCACTAAAGGATGGCTTCTAACTGTTGTTATGCTATCTAGTATACCTCTTCTTGTCTTGTCTGGTGCTATGACGGGTACGGTAATTGCAAAAGCATCGTCGGCTGGACAAGCAGCTTATTCTAAATCAGCAGGTGTAGTAGAGCAGACAATAGGTTCCATCCGAACTGTTGCATCATTCACTGGGGAGAAACAAGCTATAGCTAAATATAATCAGTCCTTAATCAAGGTCTACAATACTTCAGTGCAAGAGGCACTAGCATCGGGTGTCGGGTTTGGATCACTCTTTTTTGTATTTATCTGCAGTTATGGTTTGGCTGTATGGTTTGGTGGGAAATTGATCATCGAGAAAGGATATACAGGAGGGGATGTTATGACTGTAATTTTTGCTGTATTAACTGGTTCAATGTGTCTTGGGCAGACATCTCCAAGCTTAAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGAATCCGGAAATTGATGCCTACGACACTACTGGGCGAAGGCTTGATGAAGTTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTGCAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAAAGTGGTGAAATTCTTATCGATGGTGTTAACCTCAAAGAGTTTCAACTAAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCGGTTCTCTTCACTTGTAGCATTAAAGAGAATATCGCCTATGGAAAGGATGGTGCTACTGATGAAGAAATCAGAGCTGTAGCAGAACTTGCTAATGCCGCCAAATTTATTGATAAGCTTCCACAGGGACTTGACACGATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTTGCAATTGCCAGAGCAATTTTGAAAGATCCAAGAATATTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCGTTGGACAGGATAATGATAAATCGGACAACTATCATTGTAGCTCACCGCTTAAGCACTATAAGGAATGTTGATACCATTGCTGTAATTCATGAAGGAAAAATTGTTGAAAGAGGTTCACATGTTGAGCTCATCAAAGATCCTAATGGAGCCTATAGCCAGCTTATTAGGCTGCAAGAAATGAAGGGATCAGAACAGATTCAAAATGAAGAAACTGACACAAACAAGTCCAACAGTATTGTGCATTCTGGAAGATTATCAAGTCAAAGATCTTTTTCCATAAGATCAATAAGCCAAGGGTCACCTGGAAACAGCGATCGTCGCTCTTTCTCAACATCATATGTTGCACCTATAACAGATGGCTTCTTAGAAAATGCAGATGGTGGACCTCAAGCTTCTCCTTCAAAAAAAACTTCACCGCCCGAAGTGCCACTTTATCGCTTGGCATATTTTAACAAACCCGAGATTTCAGTCTTGTTAATGGGAACTATAGCTGCAGTGCTACATGGAGTTATAATGCCTGTTTTTGGGCTCTTACTTTCTAAAATGATTAGTATTTTCTACAAGCCAGCTGATGAACTTCGTCATGATTCAAAATTTTGGGCAATAGTGTTTGTAGCAGTTGCCGTGGCATCATTAATCGTTATTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGAAAAACGTGTTTTGAGAAAGTTGTTCACATGGAAGTAAGTTGGTTTGATGAGACTGATCATTCAAGCGGAGCACTTGGAGCAAGGCTCTCCACTGATGCAGCATCAGTTAGAGCTCTTGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATCGCTACAGCAATAGCTGGCTTGGTTATTGCTTTTGGAGCGAGCTGGCAGCTCGCTTTCGTCGTCCTCGCTTTGGCGCCTCTATTAGGACTAAATGGATATGTGCAAATAAAAGTCTTGAAAGGATTCAGTGCAGATGCCAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTTTGTGCCGAAGAGAAAGTGATGGAATTATATCAGGAAAAATGCGAGGGACCAATTAAGAAAGGCATACGGCGAGGGATAATAAGTGGATTTGGTTTTGGTTTATCATTCTTCATGCTGTATGCAGTTTATGCATGCTGTTTTTACGCTGGAGCTCGACTTGTAGAGGATGGAAAATCTAAATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTCAGCATGACAGCTATGGGAGTCTCACAATCTGGAACCTTGGCCCCTGATTCATCTAATGCAAAAAGTGCTGTTGCTTCCATATTTGCTATTCTTGACCAGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACACTGGAAAATGCCAAGGGAGAAATTGAGTTTAACCATGTCAGTTTCAAGTATCCTACTAGACCTGATGTTCAAATATTCACAGATCTTTGCTTGAACATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGGTTTTACGACCCCGACTCAGGCCATATTACACTCGATGGAGTAGAAATTCAAAGGATGCAAGTGAAATGGTTAAGACAACAAATGGGACTAGTTAGCCAAGAGCCAGTTCTTTTCAATGACACAGTTCGAGCCAATATTGCATACGGAAAAGGCGGAGATGCAACGGAAGCAGAAATTGTAGCTGCAGCAGAATTGGCAAATGCTCACCAGTTCATCAGTAGTTTGCAGAAGGGTTATGACACGATAGTAGGCGAGAGAGGAATTCAGTTATCCGGGGGACAGAAGCAGCGCGTGGCAATTGCGAGAGCTATGGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGACTGCGTTATGGTGGAGCGAACGACAATAATAATTGCTCACAGGTTATCGACGATTAAGGGTGCAGATTTAATAGCAGTAGTTAAAAATGGTGTGATAGCAGAGAAAGGAAAACATGAAAAATTGCTACATAAGGCTGGTGACTATGCTTCTTTAGTAGCATTATACACACATAGAGGCGCTTCTTCATCTTAG 3855 0.4114 MAMDISLEGDIASIQSVEDHESKKDSDKSKAKDETTNTVPLYKLFSFADPLDRLLMFAGTIGAIGNGISIPLMILIFGNLINAFGDSTSSKVVDEVSKVSLKFVYLGAGTFVASFLQLACWMITGERQAARIRGLYLKTILRQDVSFFDKETNTGEVVGRMSGDTVLIKDAMGEKVGQFIQFVSTFIGGFVIAFTKGWLLTVVMLSSIPLLVLSGAMTGTVIAKASSAGQAAYSKSAGVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKVYNTSVQEALASGVGFGSLFFVFICSYGLAVWFGGKLIIEKGYTGGDVMTVIFAVLTGSMCLGQTSPSLSAFAAGQAAAFKMFETIKRNPEIDAYDTTGRRLDEVRGDIELREVCFSYPTRPDELIFNGFSLAIPSGTTVALVGQSGSGKSTVVSLIERFYDPQSGEILIDGVNLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIIVAHRLSTIRNVDTIAVIHEGKIVERGSHVELIKDPNGAYSQLIRLQEMKGSEQIQNEETDTNKSNSIVHSGRLSSQRSFSIRSISQGSPGNSDRRSFSTSYVAPITDGFLENADGGPQASPSKKTSPPEVPLYRLAYFNKPEISVLLMGTIAAVLHGVIMPVFGLLLSKMISIFYKPADELRHDSKFWAIVFVAVAVASLIVIPCRFYFFGVAGGKLIQRIRKTCFEKVVHMEVSWFDETDHSSGALGARLSTDAASVRALVGDALGLLVQNIATAIAGLVIAFGASWQLAFVVLALAPLLGLNGYVQIKVLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKKGIRRGIISGFGFGLSFFMLYAVYACCFYAGARLVEDGKSKFSDVFLVFFALSMTAMGVSQSGTLAPDSSNAKSAVASIFAILDQKSQIDPSDESGMTLENAKGEIEFNHVSFKYPTRPDVQIFTDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVEIQRMQVKWLRQQMGLVSQEPVLFNDTVRANIAYGKGGDATEAEIVAAAELANAHQFISSLQKGYDTIVGERGIQLSGGQKQRVAIARAMVKNPKILLLDEATSALDAESEKVVQDALDCVMVERTTIIIAHRLSTIKGADLIAVVKNGVIAEKGKHEKLLHKAGDYASLVALYTHRGASSS 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00908 1284 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Vivi1g00908 1284 SUPERFAMILY ABC transporter transmembrane region 704 1022 IPR036640 GO:0005524|GO:0016020
Vivi1g00908 1284 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Vivi1g00908 1284 SUPERFAMILY ABC transporter transmembrane region 43 360 IPR036640 GO:0005524|GO:0016020
Vivi1g00908 1284 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Vivi1g00908 1284 SMART AAA_5 405 606 IPR003593 GO:0016887
Vivi1g00908 1284 FunFam ABC transporter B family member 1 696 1004 - -
Vivi1g00908 1284 FunFam ABC transporter B family member 9 43 375 - -
Vivi1g00908 1284 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Vivi1g00908 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1275 IPR027417 -
Vivi1g00908 1284 MobiDBLite consensus disorder prediction 620 667 - -
Vivi1g00908 1284 Gene3D - 376 636 IPR027417 -
Vivi1g00908 1284 Pfam ABC transporter transmembrane region 716 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00908 1284 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00908 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00908 1284 Gene3D - 1028 1280 IPR027417 -
Vivi1g00908 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Vivi1g00908 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00908 1284 FunFam ABC transporter B family member 1 368 617 - -
Vivi1g00908 1284 MobiDBLite consensus disorder prediction 627 667 - -
Vivi1g00908 1284 FunFam ABC transporter B family member 9 1005 1027 - -
Vivi1g00908 1284 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Vivi1g00908 1284 Gene3D ABC transporter type 1, transmembrane domain 101 1012 IPR036640 GO:0005524|GO:0016020
Vivi1g00908 1284 Pfam ABC transporter 1058 1206 IPR003439 GO:0005524
Vivi1g00908 1284 PANTHER ABC TRANSPORTER B FAMILY 17 619 IPR039421 -
Vivi1g00908 1284 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Vivi1g00908 1284 CDD ABC_MTABC3_MDL1_MDL2 1038 1273 - -
Vivi1g00908 1284 FunFam ABC transporter B family member 1 1028 1277 - -
Vivi1g00908 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 616 IPR027417 -
Vivi1g00908 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Vivi1g00908 1284 Pfam ABC transporter 397 545 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00908 Vivi-Chr1 19261192 19266784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00908 39 1278 Calmodulin-binding Proteins AT2G36910 44.489 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00908 K05658 - gmx:100800293 1955.26