Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00905 ATGCAGTTTCCAAATTCTCTACTATATAAGATCCTAACAACAATACATGCTCCACTCACAACCATTTTTCAACTAGCAATTGTTTTTGTTTCTTCATTCATTCATTCATTCATTCTTGCTACGGCTACTTTTCTATCTTCACCTTTTAGTTCCAAGGAAATGGATGCAGATGTTGCAAGTAATCAGCAAGTAGTGGAATCTGGAAGCAAGCAAGATTCAGAGAAGAGAAAAGCTAAAGATGAAACCACTAATACAGTTCCATTGTACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTGTTGATGTTTGTTGGGACTGTTGGTGCTATTGGGAATGGAATCTCTATGCCTTTAATGACATTGATATTTGGAAATATGATCAATGCATTTGGAGGATCTTCAAGCACTAAAGAAGTTGTTGATCAAGTTTCCAAGGTGTCCTTGAAATTCGTATACTTAGGCGTGGGGACGTTCGTTGCGTCTTTTTTGCAATTGACTTGCTGGATGATCACTGGTGAGAGACAGGCGGCAAGAATCAGAGGCTTATACCTCCAAACTATTTTGAGACAAGATGTGAGTTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTCGGAAGAATGTCGGGTGATACTGTTCTAATTCAAGATGCCATGGGGGAGAAGGTGGGACAGTTTCTACAGCTGATGGCTACATTCTTTGGAGGTTTTGTGATAGCATTCATCAAGGGGTGGCTTTTGACTCTTGTGATGATGTCTTGTATTCCACTTCTTGTTTTGTCTGGTGCTATGATGAGCATGGTTATTGCGAAAGCATCATCAACTGGACAAGAAGCTTATTCCAAAGCAGCAACTGTAGTAGAGCAGACAATAGGTTCTATTCGAACTGTTGCGTCTTTCACCGGAGAGAAACAAGCCATAGCTAAATATGATCAGTCTTTACTTGATGCTTACACAAGTGTAGTAAAAGAGGCACTAGCTTCTGGTTTGGGATTTGGTTCACTCTACTTTGTTTTTATTGCCAGCTATGGTTTGGCAGTATGGTTTGGAGGGAAAATGGTAATAGAGAAAGGTTATACAGGAGGGGAGGTTGTGACTGTAATTTTTGCTGTATTGACCGGATCCCTGTCTCTGGGGCAGGCATCACCAAGCTTGAGTGCATTTGCTTCAGGACAAGCTGCAGCATTTAAGATGTTTGAGACGATTAAAAGGAAGCCGGAAATTGATGCTTACGACACAACCGGGAGAAAGCTTGATGACATTCGGGGAGACATTGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCGGATGAACTGATATTCGATGGATTTTCTCTTACAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGAAGTGGAAAATCCACAGTTGTCAGTTTGGTTGAGAGATTTTATGATCCACAGGCTGGCGAAGTTCTCATTGATGGTATCAACCTTAAAGAATTTCAACTAAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCGGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGAAAGGATGGCGCCACCGATGAAGAAATCAGAGCTGCCGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAACATGGAACTCAGCTCTCGGGTGGTCAAAAGCAAAGAGTTGCAATTGCGAGAGCAATTTTGAAAGATCCAAGAATCTTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCCGAATCTGAGAGAATTGTACAAGAGGCGTTGGACAGAATAATGGTGAACCGAACAACTGTTATTGTAGCTCACCGCTTAAGTACCATAAAGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAATTGAAAGAGGTTCACATGCTCAGCTCACAAGGGTTCCTGATGGAGCCTATAGCCAGCTCATTAGGCTGCAAGAAATGAAAGGGTCAGAACAGAATGTTGAAAATGACACAAGCAAGTCAAACAGTATAGTGCTATCTGAAAGACGACCGAGTCAAAGATCTTTATTGTCAAGATCTATAAGCCAACTGTCATCTGGAGATGGTAACAGCGGTCGTCACTCATTCTCAGCGTCATTTGGTGTGCCCACCGCAATAGTTGGCTTTCCAGAAACTGCCGAAGGTGGACCTCAGGCTCCTCTTTCAACGATTTCTTCACCACCGGAAGTGCCACTTTATCGCCTGGCCTATTTAAACAAACCCGAGATTCCTGTCTTACTTATGGGGACTATAGCTGCAATTCTGCATGGTGCAATATTACCGACTTTCGGCCTCTTACTTTCCAAAATGATAAGTATTTTCTACGAGCCACATGACGAACTTCGTCACGATTCAAAAGTTTGGGCATTAATATTTGTTGGGCTCGGTGTTGCGTCGTTATTCATTTTTCCATGTCGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGGCTCAGGAAAATGTGTTTTGAGAAGGTAGTTCACATGGAAGTAAGTTGGTTTGATAAAGCCGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTTTCTACTGATGCAGCTTCGATTCGAGCTTTGGTTGGCGATGCACTTGGTTTACTGGTTGAAAATATTGCTACAGCTATTGCCGGCTTGGTAATTGCTTTTGTAGCTAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTCCTAGGACTAAATGGATTTTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCACAGATGCGAAGAAATTGTACGAGGAAGCGAGTCAAGTGGCTAATGATGCAGTAGGAAGCATAAGAACAGTTGCATCTTTCTGTTCTGAAGAGAAGGTGATGGAATTATATAAGCAAAAATGTGAGGGACCAATTAAGACGGGCATAAGGCGAGGGATAGTAAGCGGATTTGGTTTCGGAGTATCATTCTTGGTGTTGTATGCAGTATATGCATGCAGTTTTTATGCTGGAGCGCGTCTCGTTGAGGATGGAAAATCTTCATTCTCAGATGTTTTTCGCGTCTTTTTTGCTTTAAGCATGGCAGCTATTGGACTTTCTCAATCTGGGTCGTTGGTACCTGATTCAACTAAGGCCAAAAGTGCAGCTGCTTCCATATTTGCTATTCTTGATAGGAAATCACTCATAGATCCAAGTGATGAATCAGGAATCACATTGGAAGAAGTCAAAGGAGAAATTGAGTTTAAGCATGTCAGTTTCAAGTATCCTACTAGACCCGATATTCAAATATTCACAGATCTTTGCTTGAACATTCATAGCGGCAAGACAGTTGCGCTGGTTGGAGAAAGTGGAAGTGGAAAATCAACCGTGATCTCATTGATACAAAGATTTTATGATCCAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAATCTGCAAGTGAAATGGCTAAGACAACAAATGGGACTAGTAAGCCAAGAGCCTGTTTTGTTTAATGACACTATCAGAGCCAATATTGCATATGGAAAAGGCGGAGATGCATCCGAGGCAGAGATCATAGCTGCAGCAGAATCGGCAAATGCTCACAACTTCATTAGTAGTTTGCAGAAGGGTTACGACACGATAGTAGGAGAGAGAGGAGTTCAGTTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGACCGCGTTATGGTGGAGCGAACGACAATAATAGTTGCTCACAGGTTATCGACGATTAAGGGTGCAGATTTAATAGCAGTAGTTAAGAATGGTGTGATAGCAGAGAAAGGAAAACATGAAACATTGCTACATAAGGGTGGTGACTATGCTTCATTAGTGGCATTGCACACACATAGAGGTGCTTCTTCATCTTAG 4002 0.4178 MQFPNSLLYKILTTIHAPLTTIFQLAIVFVSSFIHSFILATATFLSSPFSSKEMDADVASNQQVVESGSKQDSEKRKAKDETTNTVPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSSSTKEVVDQVSKVSLKFVYLGVGTFVASFLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLMATFFGGFVIAFIKGWLLTLVMMSCIPLLVLSGAMMSMVIAKASSTGQEAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLLDAYTSVVKEALASGLGFGSLYFVFIASYGLAVWFGGKMVIEKGYTGGEVVTVIFAVLTGSLSLGQASPSLSAFASGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFDGFSLTIPSGTTVALVGQSGSGKSTVVSLVERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHAQLTRVPDGAYSQLIRLQEMKGSEQNVENDTSKSNSIVLSERRPSQRSLLSRSISQLSSGDGNSGRHSFSASFGVPTAIVGFPETAEGGPQAPLSTISSPPEVPLYRLAYLNKPEIPVLLMGTIAAILHGAILPTFGLLLSKMISIFYEPHDELRHDSKVWALIFVGLGVASLFIFPCRFYFFGIAGGKLIKRLRKMCFEKVVHMEVSWFDKAEHSSGAIGARLSTDAASIRALVGDALGLLVENIATAIAGLVIAFVASWQLALIILALVPLLGLNGFLQVKFLKGFSTDAKKLYEEASQVANDAVGSIRTVASFCSEEKVMELYKQKCEGPIKTGIRRGIVSGFGFGVSFLVLYAVYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGSLVPDSTKAKSAAASIFAILDRKSLIDPSDESGITLEEVKGEIEFKHVSFKYPTRPDIQIFTDLCLNIHSGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGKEIQNLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAESANAHNFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHETLLHKGGDYASLVALHTHRGASSS 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00905 1333 CDD ABC_6TM_Pgp_ABCB1_D2_like 755 1070 - -
Vivi1g00905 1333 FunFam ABC transporter B family member 9 1054 1076 - -
Vivi1g00905 1333 Gene3D - 1077 1326 IPR027417 -
Vivi1g00905 1333 Gene3D - 416 665 IPR027417 -
Vivi1g00905 1333 Pfam ABC transporter 1107 1255 IPR003439 GO:0005524
Vivi1g00905 1333 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Vivi1g00905 1333 SMART AAA_5 1114 1307 IPR003593 GO:0016887
Vivi1g00905 1333 SMART AAA_5 453 625 IPR003593 GO:0016887
Vivi1g00905 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1076 1324 IPR027417 -
Vivi1g00905 1333 Pfam ABC transporter transmembrane region 765 1035 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00905 1333 Pfam ABC transporter transmembrane region 103 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00905 1333 FunFam ABC transporter B family member 1 745 1053 - -
Vivi1g00905 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00905 1333 PANTHER ABC TRANSPORTER B FAMILY 64 667 IPR039421 -
Vivi1g00905 1333 CDD ABC_6TM_Pgp_ABCB1_D1_like 103 399 - -
Vivi1g00905 1333 ProSitePatterns ABC transporters family signature. 1227 1241 IPR017871 GO:0005524|GO:0016887
Vivi1g00905 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 766 1052 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00905 1333 CDD ABC_MTABC3_MDL1_MDL2 1087 1322 - -
Vivi1g00905 1333 Gene3D ABC transporter type 1, transmembrane domain 90 674 IPR036640 GO:0005524|GO:0016020
Vivi1g00905 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 662 IPR003439 GO:0005524
Vivi1g00905 1333 FunFam ABC transporter B family member 9 90 422 - -
Vivi1g00905 1333 FunFam ABC transporter B family member 1 1077 1326 - -
Vivi1g00905 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1087 1324 IPR003439 GO:0005524
Vivi1g00905 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 664 IPR027417 -
Vivi1g00905 1333 CDD ABC_MTABC3_MDL1_MDL2 426 664 - -
Vivi1g00905 1333 SUPERFAMILY ABC transporter transmembrane region 90 410 IPR036640 GO:0005524|GO:0016020
Vivi1g00905 1333 SUPERFAMILY ABC transporter transmembrane region 753 1071 IPR036640 GO:0005524|GO:0016020
Vivi1g00905 1333 MobiDBLite consensus disorder prediction 668 690 - -
Vivi1g00905 1333 FunFam ABC transporter B family member 1 416 665 - -
Vivi1g00905 1333 Pfam ABC transporter 445 593 IPR003439 GO:0005524
Vivi1g00905 1333 Gene3D ABC transporter type 1, transmembrane domain 1054 1076 IPR036640 GO:0005524|GO:0016020
Vivi1g00905 1333 Gene3D ABC transporter type 1, transmembrane domain 747 1053 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00905 Vivi-Chr1 19250759 19256277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00905 86 1327 Calmodulin-binding Proteins AT2G36910 44.956 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00905 K05658 - gmx:100800293 2034.22