Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00901 ATGGTGGCCAAGACTAGCTCGGATGGAGATATTGCTTCAACTGAGATGACAGGGTCAACAAGTCATAGTCCACCGATTCGTGCAGGTTCTGAAAATGTTCAGGAAGTGGCTGACATGCACAAGGAATCCAAGAAGAACAAGGTGAAGGATCAAAGAATCAAGACAGTACCTTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTTCTAATGATTGTTGGAACTATAAGTGCTGTTGGAAATGGAGTCTCTATGCCTTTAATGACTATACTTATCGGAGATACTATCGATGCTTTTGGAGGAAATGTTAACACCAAACAATTAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGTATGCACCTTTTTTGCGGTGTTTCTGCAGGTGGCTTGCTGGATGATCACAGGAGAGAGACAAGCCGCGAGAATAAGGGCCTTATACCTCAAAGCAATTTTAAGGCAAGACATAAGCTTCTTTGACAAGGAAACAAACAATGGTGAGATTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCTATGGGAGAGAAGGTAGGAAAGTTTATACAGTATGTGTCAGGTTTTTTAGGAAGTTTAGTTGTTGCATTCATCAAGGGGTGGCTTTTATCCCTTGTTCTTCTATCTTCTCTTCCGTTTCTTGTCCTCTCCGGTTCCATGATGAGTTTTGCTTTCGCAAAGATGGCATCTCGTGGACAAACAGCATATTCTGAAGCAGCAACTGTAGTAGAAAAGATACTCGGTTCAATTCGAACAGTTGCATCATTTACCGGCGAGAAGCAAGCTATATCTCAATACAATCAATCCTTAACTAAAGCCTACAAAATTGGAGTACAGGAGGGATTGGCTATTGGCTTAGGCCTTGGATCGGTTCGCTTATTTGTTTATTGCACTTATGCTTTGACCGTATGGTTTGGAGGGAAGATGGTACTGGAGAAGGGTTATACTGGAGGTGAAGTCATAAGCATATTTTTCGCAGTACTGACAGGTTCCATGTCACTTGGACAAGCAATTCCATGCTTATCTGCATTTGCTGCTGGACAAGCTGCATCATTTAAAATGTTTGAAACAATTAAAAGGAAGCCAGAAATCGATGCTTATGATACTACTGGGAGAAAGCTCGATGACATTCGTGGAGACATAGAGCTTAGGGAGGTTTTCTTTAGTTATCCTACAAGACCGGATGAGCTGATATTCAATGCATTTTCTATTTTAATATCAAGTGGCACTACTGCGGCTTTGGTCGGGCAAAGTGGGAGTGGGAAATCAACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATCGACGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGCGGCAACTGATGAAGAAATCAGATCTGCGGCAGAACTTGCTAATGCTACTATTTTCATCGATAAGTTTCCTCATGGACTTGAAACAATGGTCGGCGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGGGCAATTCTCAAAGATCCAAAAATTTTACTCCTTGATGAAGCAACTAGTGCACTTGATGCAGAATCTGAAAGAGTGGTACAAGAGACACTAGACAAAATCATGATAAATCGAACAACCATCATTGTAGCTCATCGCCTTAGCACAATAAGGAATGCTGATATCATCGCTGTTATTCACCAAGGAAAAGTAGTAGAAAAAGGTACATATGCTGAGCTAACTAAAGATCCCGGTGGAGCTTATAGTCAACTCATTAGGTTGCAAGAAATTAAGAGGGATTCATCAGAACAATATGGTGCTAATGACTCCGATAGTAGTCACAACTCATTCGTAGTATCGAATTCTATGCCCACCACACAAGTAAAACGGTCTGAAAAAGTTCTTCCTTCAGAAGTAACATCACATGAAATTAAAACTCGAGATATCTCATTTCTGCGCCTCGCTTATCTTAACAAGCCTGAAATCCCTATGTTACTCATAGGGACTCTAGCAGCAGTGCTAACCGGAGCAGTGCTACCTATTCTGGGACTTCTAATCTCAAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTCCGCAAAGACTCGAAGTTTTGGGCAATAATATTTGTTTCCTTTAGCGTGGCATCGTTTGCTTTTCACCCCTTAAGGTCCTACTTTCTTGCAGTAGCAGGTTCGAAGTTAATAAAAAGGATCCGATTAATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGATGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTTGATTCGTACTTTAGTTGGCGATGCATTCGGTTTACTCGTTCAAGATACTTCTACAGTTATTACAGCCTTGGTAATTTCCTTTGAGGCAAATTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCTCTACTTTTAGTAAATGGACATTTGCAAATCAAGTCTATGCAAGGATTCAGCTCAGATGCAAAGAAACTTTATGAGGAAGCAAGTCAAATAGCGAATAACGCAGTAGGGAATATCAGAACAGTTTCATCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTATAGCACCGGTCCAGACAGGAAAACGGCAGGGTATAGTCAGTGGAATTGGTTTAGGCTTAGCAATCTTCTTCCTGTTTTCTGTCTATGCATGCAGTTTTTATGCGGGCGCCAAACTTGTTGAGAATGGAAAAACATCGATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACATTGGCAGCCGCCGCGATATCTCAATCCGCCTTCCTGGCTCCAGGAGCTAGTAAAGCAAAAAGTTCAGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAGAAATAGACCCTAGTGATGAATCAGGAATGACAATGGAAAACGTGAAGGGAGAGATCGAGTTCTGTCATGTCAGTTTCAAGTATCCAACTAGACCCGATATTCATATACTCAAAAATCTTTCCTTAACCATTCATTCCGGACAGACAGTTGCCTTGGTTGGAGAAAGTGGAAGTGGAAAGTCAACTTTGATATCATTGTTGCAAAGATTTTATGATCCAGATTCCGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTAGTAAGCCAAGAGCCTGTATTGTTTAATGACACCATCAGAGCCAACATTTCCTATGGAAAAGGCGGAAATGCATCTGAGGCTGAAATTATCGCTGCAGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGCTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGAATACAACTATCTGGAGGACAGAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAACAGTCCAAGAATATTGTTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTTGTTCAAGATGCACTTGATAGAGTGAGGATGGATAGAACAACCATTGTGGTGGCTCATAGATTGTCTACCATAAAAGGTGCAAACTCAATTGCAGTTGTTAAAAATGGAGTAATTGAGGAGAAAGGAAAACATGACGCATTGATCAACAAGGGTGGTATCTATGCTTCTTTAGTAGCACTTCACACAAATGTTAATGCTTAA 3810 0.4071 MVAKTSSDGDIASTEMTGSTSHSPPIRAGSENVQEVADMHKESKKNKVKDQRIKTVPFYKLFSFADSWDYFLMIVGTISAVGNGVSMPLMTILIGDTIDAFGGNVNTKQLVHQVSKVSLKFAIMGVCTFFAVFLQVACWMITGERQAARIRALYLKAILRQDISFFDKETNNGEIVGRMSGDTVLIQEAMGEKVGKFIQYVSGFLGSLVVAFIKGWLLSLVLLSSLPFLVLSGSMMSFAFAKMASRGQTAYSEAATVVEKILGSIRTVASFTGEKQAISQYNQSLTKAYKIGVQEGLAIGLGLGSVRLFVYCTYALTVWFGGKMVLEKGYTGGEVISIFFAVLTGSMSLGQAIPCLSAFAAGQAASFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVFFSYPTRPDELIFNAFSILISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDAATDEEIRSAAELANATIFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQETLDKIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGTYAELTKDPGGAYSQLIRLQEIKRDSSEQYGANDSDSSHNSFVVSNSMPTTQVKRSEKVLPSEVTSHEIKTRDISFLRLAYLNKPEIPMLLIGTLAAVLTGAVLPILGLLISKMINTFFEPADELRKDSKFWAIIFVSFSVASFAFHPLRSYFLAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAALIRTLVGDAFGLLVQDTSTVITALVISFEANWQLSLIILVLLPLLLVNGHLQIKSMQGFSSDAKKLYEEASQIANNAVGNIRTVSSFCAEEKVMELYQKKCIAPVQTGKRQGIVSGIGLGLAIFFLFSVYACSFYAGAKLVENGKTSISEVFQVFFSLTLAAAAISQSAFLAPGASKAKSSAASIFAILDQKSEIDPSDESGMTMENVKGEIEFCHVSFKYPTRPDIHILKNLSLTIHSGQTVALVGESGSGKSTLISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANISYGKGGNASEAEIIAAAELANAHKFISSLQQGYDTIVGERGIQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRMDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDALINKGGIYASLVALHTNVNA 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00901 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 369 - -
Vivi1g00901 1269 Gene3D ABC transporter type 1, transmembrane domain 60 996 IPR036640 GO:0005524|GO:0016020
Vivi1g00901 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Vivi1g00901 1269 FunFam ABC transporter B family member 1 1016 1265 - -
Vivi1g00901 1269 SMART AAA_5 1053 1247 IPR003593 GO:0016887
Vivi1g00901 1269 SMART AAA_5 423 595 IPR003593 GO:0016887
Vivi1g00901 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Vivi1g00901 1269 Gene3D - 386 635 IPR027417 -
Vivi1g00901 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Vivi1g00901 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00901 1269 CDD ABC_MTABC3_MDL1_MDL2 1026 1261 - -
Vivi1g00901 1269 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Vivi1g00901 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1263 IPR027417 -
Vivi1g00901 1269 MobiDBLite consensus disorder prediction 645 671 - -
Vivi1g00901 1269 MobiDBLite consensus disorder prediction 1 28 - -
Vivi1g00901 1269 Gene3D - 1016 1268 IPR027417 -
Vivi1g00901 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
Vivi1g00901 1269 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Vivi1g00901 1269 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00901 1269 Pfam ABC transporter transmembrane region 704 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00901 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00901 1269 Pfam ABC transporter 1044 1194 IPR003439 GO:0005524
Vivi1g00901 1269 Pfam ABC transporter 417 563 IPR003439 GO:0005524
Vivi1g00901 1269 FunFam ABC transporter B family member 1 684 989 - -
Vivi1g00901 1269 FunFam Uncharacterized protein 990 1016 - -
Vivi1g00901 1269 FunFam ABC transporter B family member 1 386 635 - -
Vivi1g00901 1269 SUPERFAMILY ABC transporter transmembrane region 692 1011 IPR036640 GO:0005524|GO:0016020
Vivi1g00901 1269 FunFam ABC transporter B family member 9 60 392 - -
Vivi1g00901 1269 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Vivi1g00901 1269 PANTHER ABC TRANSPORTER B FAMILY 34 637 IPR039421 -
Vivi1g00901 1269 MobiDBLite consensus disorder prediction 642 671 - -
Vivi1g00901 1269 SUPERFAMILY ABC transporter transmembrane region 54 380 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00901 Vivi-Chr1 19207609 19213069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00901 49 1267 Calmodulin-binding Proteins AT2G36910 42.540 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00901 K05658 - gmx:100777713 1908.26