Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00900 ATGGCTGACATGCATGAAGAAAAAGAATCCAACAAGAAGGAGGTGATGGATCAAAGAATCAAGACAGTGCCGTTTTACAAGCTTTTCTCGTTTGCGGATTCTTTGGATTATTTTCTTATGATTGTTGGAACTGTAAGTGCTGTTGCGAATGGAGTCTCTACGCCTTTGATGACTATAATTATTGGAGATGCTGTTGATGCTTTCGGAGGAAATGCTAACAATAAACAAGTAGTTCATCAAGTTTCAAAGGTGTCTCTCAACTTTGCAATCACGGGTGCATGCGCCTTTTTAGCAGTGTTTCTGCAGGTGGCTTGTTGGATGATCACGGCCGCGAGACAGACTGCGAGAATAAGGGCCTTATATCTCAAAGCGATTTTAAGACAGGATATCGGTTTCTTTGACAAGGAAACAAACAGTGGTGAGGTTGTTGGAAGAATGTCAGGTGACACGGTTCTTATTCAAGAAGCCATGGGAGATAAGGTAGCAAAATTCATACAACATATGTCGTGTTTTTTAGGAAGTTTAGTGGTGGCATTCGTCAAGGGTTGGCTGCTAACCCTTGTCCTTTTATCAACTCTTCCTCTTCTTATCCTCTCTGGTTCAATAATGAGCTGTACTTTTGCAAAGATGGCATCTCGTGGACAAGCTGCTTATTCCGAAGCAGCAACTATTGTAGAGCGGAAAATCAGTTCAATTCGAACGGTTGCGTCATTTACCGGCGAGAAGCAAGCTATAGCTCAATACAATCAATCGTTAACTAAAGCTTACAAAATTGGAGTACAAGAGGGATTGGCGATTGGTTTAGGCCTTGGTACGGTTCGTTTATTTGTTTATTGCACTTATATTTTGACGGTATGGTTTGGAGGAAAGATGGTAGTGGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTCGCTATACTAACAGGTTCCCTGACTCTGGGACAGGCAGCTCCATGCTTAACTTCATTTGCTGCTGGACAAGCTGCAGCGTTAAAGATGTTTGAAACGATTAAAAGGAAGCCAGAGATCGATGCTTATGATACTACTGGGACAAAGCTCGATGACATTCGCGGAGACATAGAGGTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAAATGAAATTATATTGAATGCATTTTCTATGTCAATATCAAGTGGCACTACCGCGGCTTTGGTCGGGCAAAGTGGAAGTGGGAAATCAACCGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTCAAATTCTCATTGACGGTATCGACCTTAGAGAATTCCAACTGAAATGGATCAGACGGAAAATAGGTCTAGTCAGTCAGGAACCGGTTCTTTTTAGTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGCAGCAACCGATGAAGAAATCAGAGATGCGGCAGAACTTGCTAATGCTGCTAATTTCATTGATAAATTTCCTCATGGTCTTGAGACGATGGTCGGCGAGCATGGAGCTCAACTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTCAAAGATCCAAGAATTCTACTACTTGATGAAGCCACAAGTGCACTTGATGCAGAATCTGAAAGAGTGGTACAAGAGACACTAGACAAAATTATGATAAACCGAACAACCATCATCGTAGCACATCGCCTTAGCACAATACGGAATGCTGATATCATCGCTGTTATTCATCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAGGATCCTGATGGAGCTTATAGTCAACTTATTAGGTTGCAAGATATTAAAAGGGATCCATCAGATAAATATGGTGCTAATGACTCAGATAAGTTAGAAAATTTTGTAGATTCTGGAAGAGTGTCAAGTCAACGGTCTTTAAGCCGCGGATCATCTGAGATTGGACGCAGCAGTCGCCATTCATTCAGAGTAACAACTTCTATACCTCCCACACTAGTAGGTGGATCTGAACTTGTTTCTTCAGAGGAAACAACATCGCCAAAAAGTAAAACTCAAAATGTCCCATACCTCCGCCTGGCTTATCTTAACAAGCCTGAAATCCCAGCGTTACTCATGGGGACAATAGCAGCAGCTGTAACTGGAGCAATGCTACCAATTCTAGGACTTCTAGTCTCCAAAATGATACATACATTCTTTGAGCCTGCAGATAAACTTCGTAAAGACTCGAAGTTTTGGGTTTTAATATTCGTTTCCCTTAGCGTGGTATCGTTCACTTTTCATCCAATAAGGTCATACTTTTTTGCCGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGTTAATGTGCTTCGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAACTGAGAATTCAACTGGTGCACTTGGTGCAAGGCTTTCAACTGATGTTGCTTCGATTCGAACTTTGGTTTGCGATGCGCTCGGTTTGATGGTTCAAGATATTTCAACAGTTATTACAGCTTTGGTAATTTCCTTTGAAGCAAGTTGGCAGCTTTCTCTCATCATTCTTGCTTTAATACCTATACTATTAATAAGTGGACATTGGCAAAAGAAGTACATGCAAGGATTTAACACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAACGATGCAGTAGGAAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGATAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGTACCAGTACAAACAGGAAAAAGGCAAGGTTTAGTCAGTGGAACTGGTTTTGGCTTAGCCATTTTCCTTTTCTTCAGTTTCTATGCATGCAGTTTTTATGCCGGCGCCCAACTTGTTGCAAAGGGCAAAACATCAATGTCAGAAGTTTTTCAAGTATTTTACTCTCTCACAATGGCAGCCACCGCGTTATCTCAATCCAGTTTCATGGCTCCAGGAGCTAGTAAAGCAAAATGTTCTGTTGATTCAGTATTTGCTATTCTTGATCAAAAATCAGAAATAGACCCTAGTGACGAATCAGGAATGATACTGGAAGATGTGAAGGGAGAGATCGAGTTCCATCATGTCACTTTCAAGTATCCAACTAGACCTGATGTTCATATATTCAAAAATCTTTCCTTAATCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAGTCAACTTTGATATCTTTGTTGCAAAGATTTTACAATCCAGATTCCGGTCAGATAAAGCTGGATGGAACAGAAATTCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTAGTAAGCCAAGAGCCTGTTCTGTTCAATGATACCATCAGAGCCAACATTTCCTTTGGAAAAGGTGGAAATGCATCTGAGGCTGAAATTATCGCTGCAGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGCTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGAATACAACTATCTGGAGGACAGAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAACAGTCCGAGAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAATGGTTCAAGATTCACTAGATAGAGTGAGGATGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAAGATGCAAATTCAATTGCAGTTGTTAAAAATGGAGTTATTGAAGAGAAAGGAAAACATGACGCGTTGATTAACATGGGTGGTACCTATGCTTCTTTAGTAGCACTACACACAAATAGTACTGCTTCATCTTAA 3795 0.4053 MADMHEEKESNKKEVMDQRIKTVPFYKLFSFADSLDYFLMIVGTVSAVANGVSTPLMTIIIGDAVDAFGGNANNKQVVHQVSKVSLNFAITGACAFLAVFLQVACWMITAARQTARIRALYLKAILRQDIGFFDKETNSGEVVGRMSGDTVLIQEAMGDKVAKFIQHMSCFLGSLVVAFVKGWLLTLVLLSTLPLLILSGSIMSCTFAKMASRGQAAYSEAATIVERKISSIRTVASFTGEKQAIAQYNQSLTKAYKIGVQEGLAIGLGLGTVRLFVYCTYILTVWFGGKMVVEKGYTGGEVISVFFAILTGSLTLGQAAPCLTSFAAGQAAALKMFETIKRKPEIDAYDTTGTKLDDIRGDIEVREVCFSYPTRPNEIILNAFSMSISSGTTAALVGQSGSGKSTVISLIERFYDPQGGQILIDGIDLREFQLKWIRRKIGLVSQEPVLFSCSIKENIAYGKDAATDEEIRDAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQDIKRDPSDKYGANDSDKLENFVDSGRVSSQRSLSRGSSEIGRSSRHSFRVTTSIPPTLVGGSELVSSEETTSPKSKTQNVPYLRLAYLNKPEIPALLMGTIAAAVTGAMLPILGLLVSKMIHTFFEPADKLRKDSKFWVLIFVSLSVVSFTFHPIRSYFFAVAGSKLIKRIRLMCFEKIIHMEIGWFDKTENSTGALGARLSTDVASIRTLVCDALGLMVQDISTVITALVISFEASWQLSLIILALIPILLISGHWQKKYMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEDKVMELYQKKCVVPVQTGKRQGLVSGTGFGLAIFLFFSFYACSFYAGAQLVAKGKTSMSEVFQVFYSLTMAATALSQSSFMAPGASKAKCSVDSVFAILDQKSEIDPSDESGMILEDVKGEIEFHHVTFKYPTRPDVHIFKNLSLIIHSGQTVALVGESGSGKSTLISLLQRFYNPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANISFGKGGNASEAEIIAAAELANAHKFISSLQQGYDTIVGERGIQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKMVQDSLDRVRMDRTTIVVAHRLSTIKDANSIAVVKNGVIEEKGKHDALINMGGTYASLVALHTNSTASS 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00900 1264 SUPERFAMILY ABC transporter transmembrane region 21 347 IPR036640 GO:0005524|GO:0016020
Vivi1g00900 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Vivi1g00900 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Vivi1g00900 1264 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524|GO:0016887
Vivi1g00900 1264 Gene3D - 361 640 IPR027417 -
Vivi1g00900 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1256 IPR003439 GO:0005524
Vivi1g00900 1264 FunFam ABC transporter B family member 1 353 602 - -
Vivi1g00900 1264 FunFam ABC transporter B family member 9 27 359 - -
Vivi1g00900 1264 FunFam ABC transporter B family member 1 677 985 - -
Vivi1g00900 1264 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Vivi1g00900 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00900 1264 Pfam ABC transporter 1038 1187 IPR003439 GO:0005524
Vivi1g00900 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1256 IPR027417 -
Vivi1g00900 1264 MobiDBLite consensus disorder prediction 623 676 - -
Vivi1g00900 1264 MobiDBLite consensus disorder prediction 606 676 - -
Vivi1g00900 1264 FunFam ABC transporter B family member 1 1009 1258 - -
Vivi1g00900 1264 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Vivi1g00900 1264 SMART AAA_5 1046 1240 IPR003593 GO:0016887
Vivi1g00900 1264 SMART AAA_5 390 562 IPR003593 GO:0016887
Vivi1g00900 1264 MobiDBLite consensus disorder prediction 606 622 - -
Vivi1g00900 1264 PANTHER ABC TRANSPORTER B FAMILY 4 603 IPR039421 -
Vivi1g00900 1264 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Vivi1g00900 1264 SUPERFAMILY ABC transporter transmembrane region 685 1004 IPR036640 GO:0005524|GO:0016020
Vivi1g00900 1264 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 336 - -
Vivi1g00900 1264 Gene3D - 1010 1263 IPR027417 -
Vivi1g00900 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00900 1264 CDD ABC_MTABC3_MDL1_MDL2 1019 1254 - -
Vivi1g00900 1264 Pfam ABC transporter transmembrane region 40 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00900 1264 Pfam ABC transporter transmembrane region 697 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g00900 1264 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1002 - -
Vivi1g00900 1264 Gene3D ABC transporter type 1, transmembrane domain 88 986 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00900 Vivi-Chr1 19178145 19183253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00900 13 1257 Calmodulin-binding Proteins AT2G36910 42.458 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00900 K05658 - gmx:100777713 1851.25